7X8P image
Entry Detail
PDB ID:
7X8P
Title:
Frizzled 2 CRD in complex with pF7_A5 Fab
Biological Source:
Host Organism:
PDB Version:
Deposition Date:
2022-03-14
Release Date:
2023-02-01
Method Details:
Experimental Method:
Resolution:
2.24 Å
R-Value Free:
0.24
R-Value Work:
0.21
R-Value Observed:
0.21
Space Group:
P 1
Macromolecular Entities
Polymer Type:polypeptide(L)
Description:Frizzled-2
Chain IDs:A, D
Chain Length:132
Number of Molecules:2
Biological Source:Homo sapiens
Polymer Type:polypeptide(L)
Description:Antibody pF7_A5 Fab, Light chain
Chain IDs:B, E
Chain Length:212
Number of Molecules:2
Biological Source:synthetic construct
Polymer Type:polypeptide(L)
Description:Antibody pF7_A5 Fab, Heavy chain
Chain IDs:C, F
Chain Length:229
Number of Molecules:2
Biological Source:synthetic construct
Primary Citation
An epitope-directed selection strategy facilitating the identification of Frizzled receptor selective antibodies.
Structure 31 33 43.e5 (2023)
PMID: 36513066 DOI: 10.1016/j.str.2022.11.009

Abstact

The lack of incorporating epitope information into the selection process makes the conventional antibody screening method less effective in identifying antibodies with desired functions. Here, we developed an epitope-directed antibody selection method by designing a directed library favoring the target epitope and a precise "counter" antigen for clearing irrelevant binders in the library. With this method, we successfully isolated an antibody, pF7_A5, that targets the less conserved region on the FZD2/7 CRD as designed. Guided by the structure of pF7_A5-FZD2CRD, a further round of evolution was conducted together with the "counter" antigen selection strategy, and ultimately, an FZD2-specific antibody and an FZD7-preferred antibody were obtained. Because of targeting the predefined functional site, all these antibodies exhibited the expected modulatory activity on the Wnt pathway. Together, the method developed here will be useful in antibody drug discovery, and the identified FZD antibodies will have clinical potential in FZD-related cancer therapy.

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