7X7V image
Entry Detail
PDB ID:
7X7V
EMDB ID:
Title:
Cryo-EM structure of SARS-CoV spike protein in complex with three nAbs X01, X10 and X17
Biological Source:
PDB Version:
Deposition Date:
2022-03-10
Release Date:
2022-08-17
Method Details:
Experimental Method:
Resolution:
3.83 Å
Aggregation State:
PARTICLE
Reconstruction Method:
SINGLE PARTICLE
Macromolecular Entities
Polymer Type:polypeptide(L)
Description:X17 heavy chain
Chain IDs:D (auth: A)
Chain Length:119
Number of Molecules:1
Biological Source:Mus musculus
Polymer Type:polypeptide(L)
Description:X01 heavy chain
Chain IDs:F (auth: C)
Chain Length:119
Number of Molecules:1
Biological Source:Mus musculus
Polymer Type:polypeptide(L)
Description:X01 light chain
Chain IDs:E (auth: D)
Chain Length:107
Number of Molecules:1
Biological Source:Mus musculus
Polymer Type:polypeptide(L)
Description:Spike protein S1
Chain IDs:G (auth: E)
Chain Length:189
Number of Molecules:1
Biological Source:Severe acute respiratory syndrome coronavirus
Polymer Type:polypeptide(L)
Description:X17 light chain
Chain IDs:C (auth: F)
Chain Length:107
Number of Molecules:1
Biological Source:Mus musculus
Polymer Type:polypeptide(L)
Description:X10 heavy chain
Chain IDs:B (auth: H)
Chain Length:121
Number of Molecules:1
Biological Source:Mus musculus
Polymer Type:polypeptide(L)
Description:X10 light chain
Chain IDs:A (auth: L)
Chain Length:111
Number of Molecules:1
Biological Source:Mus musculus
Ligand Molecules
Primary Citation
The neutralizing breadth of antibodies targeting diverse conserved epitopes between SARS-CoV and SARS-CoV-2.
Proc.Natl.Acad.Sci.USA 119 e2204256119 e2204256119 (2022)
PMID: 35972965 DOI: 10.1073/pnas.2204256119

Abstact

Antibody therapeutics for the treatment of COVID-19 have been highly successful. However, the recent emergence of the Omicron variant has posed a challenge, as it evades detection by most existing SARS-CoV-2 neutralizing antibodies (nAbs). Here, we successfully generated a panel of SARS-CoV-2/SARS-CoV cross-neutralizing antibodies by sequential immunization of the two pseudoviruses. Of the potential candidates, we found that nAbs X01, X10, and X17 offer broad neutralizing potential against most variants of concern, with X17 further identified as a Class 5 nAb with undiminished neutralization against the Omicron variant. Cryo-electron microscopy structures of the three antibodies together in complex with each of the spike proteins of the prototypical SARS-CoV, SARS-CoV-2, and Delta and Omicron variants of SARS-CoV-2 defined three nonoverlapping conserved epitopes on the receptor-binding domain. The triple-antibody mixture exhibited enhanced resistance to viral evasion and effective protection against infection of the Beta variant in hamsters. Our findings will aid the development of antibody therapeutics and broad vaccines against SARS-CoV-2 and its emerging variants.

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