7X2C image
Entry Detail
PDB ID:
7X2C
EMDB ID:
Title:
Cryo-EM structure of the fenoldopam-bound D1 dopamine receptor and mini-Gs complex
Biological Source:
Host Organism:
PDB Version:
Deposition Date:
2022-02-25
Release Date:
2022-06-29
Method Details:
Experimental Method:
Resolution:
3.20 Å
Aggregation State:
PARTICLE
Reconstruction Method:
SINGLE PARTICLE
Macromolecular Entities
Polymer Type:polypeptide(L)
Description:Guanine nucleotide-binding protein G(s) subunit alpha isoforms short, Isoform Gnas-2 of Guanine nucleotide-binding protein G(s) subunit alpha isoforms short
Chain IDs:B (auth: A)
Chain Length:248
Number of Molecules:1
Biological Source:Homo sapiens
Polymer Type:polypeptide(L)
Description:Guanine nucleotide-binding protein G(I)/G(S)/G(T) subunit beta-1
Chain IDs:C (auth: B)
Chain Length:358
Number of Molecules:1
Biological Source:Homo sapiens
Polymer Type:polypeptide(L)
Description:Guanine nucleotide-binding protein G(I)/G(S)/G(O) subunit gamma-2
Mutations:C68S
Chain IDs:D
Chain Length:71
Number of Molecules:1
Biological Source:Homo sapiens
Polymer Type:polypeptide(L)
Description:Nanobody35
Chain IDs:E
Chain Length:160
Number of Molecules:1
Biological Source:synthetic construct
Polymer Type:polypeptide(L)
Description:D(1A) dopamine receptor
Chain IDs:A (auth: F)
Chain Length:473
Number of Molecules:1
Biological Source:Homo sapiens
Primary Citation
Ligand recognition and biased agonism of the D1 dopamine receptor.
Nat Commun 13 3186 3186 (2022)
PMID: 35676276 DOI: 10.1038/s41467-022-30929-w

Abstact

Dopamine receptors are widely distributed in the central nervous system and are important therapeutic targets for treatment of various psychiatric and neurological diseases. Here, we report three cryo-electron microscopy structures of the D1 dopamine receptor (D1R)-Gs complex bound to two agonists, fenoldopam and tavapadon, and a positive allosteric modulator LY3154207. The structure reveals unusual binding of two fenoldopam molecules, one to the orthosteric binding pocket (OBP) and the other to the extended binding pocket (EBP). In contrast, one elongated tavapadon molecule binds to D1R, extending from OBP to EBP. Moreover, LY3154207 stabilizes the second intracellular loop of D1R in an alpha helical conformation to efficiently engage the G protein. Through a combination of biochemical, biophysical and cellular assays, we further show that the broad conformation stabilized by two fenoldopam molecules and interaction between TM5 and the agonist are important for biased signaling of D1R.

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