7X00 image
Deposition Date 2022-02-20
Release Date 2023-05-03
Last Version Date 2024-11-06
Entry Detail
PDB ID:
7X00
Keywords:
Title:
Crystal structure of peptide VSFIEFVGW in complex with HLA-B5801
Biological Source:
Source Organism:
Method Details:
Experimental Method:
Resolution:
1.45 Å
R-Value Free:
0.16
R-Value Work:
0.14
R-Value Observed:
0.14
Space Group:
P 21 21 21
Macromolecular Entities
Polymer Type:polypeptide(L)
Molecule:MHC class I antigen
Gene (Uniprot):HLA-B
Chain IDs:A
Chain Length:277
Number of Molecules:1
Biological Source:Homo sapiens
Polymer Type:polypeptide(L)
Molecule:Beta-2-microglobulin
Gene (Uniprot):B2M
Chain IDs:B
Chain Length:99
Number of Molecules:1
Biological Source:Homo sapiens
Polymer Type:polypeptide(L)
Molecule:VAL-SER-PHE-ILE-GLU-PHE-VAL-GLY-TRP
Chain IDs:C
Chain Length:9
Number of Molecules:1
Biological Source:synthetic construct
Ligand Molecules
Primary Citation
Allopurinol non-covalently facilitates binding of unconventional peptides to HLA-B*58:01.
Sci Rep 13 9373 9373 (2023)
PMID: 37296297 DOI: 10.1038/s41598-023-36293-z

Abstact

Allopurinol, widely used in gout treatment, is the most common cause of severe cutaneous adverse drug reactions. The risk of developing such life-threatening reactions is increased particularly for HLA-B*58:01 positive individuals. However the mechanism of action between allopurinol and HLA remains unknown. We demonstrate here that a Lamin A/C peptide KAGQVVTI which is unable to bind HLA-B*58:01 on its own, is enabled to form a stable peptide-HLA complex only in the presence of allopurinol. Crystal structure analysis reveal that allopurinol non-covalently facilitated KAGQVVTI to adopt an unusual binding conformation, whereby the C-terminal isoleucine does not engage as a PΩ that typically fit deeply in the binding F-pocket. A similar observation, though to a lesser degree was seen with oxypurinol. Presentation of unconventional peptides by HLA-B*58:01 aided by allopurinol contributes to our fundamental understanding of drug-HLA interactions. The binding of peptides from endogenously available proteins such as self-protein lamin A/C and viral protein EBNA3B suggest that aberrant loading of unconventional peptides in the presence of allopurinol or oxypurinol may be able to trigger anti-self reactions that can lead to Stevens-Johnson syndrome/toxic epidermal necrolysis (SJS/TEN) and Drug Reaction with Eosinophilia and Systemic Symptoms (DRESS).

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Primary Citation of related structures