7WUR image
Deposition Date 2022-02-09
Release Date 2022-12-21
Last Version Date 2024-10-30
Entry Detail
PDB ID:
7WUR
Title:
CryoEM structure of sNS1 complexed with Fab5E3
Biological Source:
Source Organism:
Dengue virus 2 (Taxon ID: 11060)
Homo sapiens (Taxon ID: 9606)
Host Organism:
Method Details:
Experimental Method:
Resolution:
3.50 Å
Aggregation State:
PARTICLE
Reconstruction Method:
SINGLE PARTICLE
Macromolecular Entities
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:Core protein
Chain IDs:A, B
Chain Length:341
Number of Molecules:2
Biological Source:Dengue virus 2
Polymer Type:polypeptide(L)
Molecule:Fab 5E3 Heavy Chain
Chain IDs:C (auth: E), E (auth: G)
Chain Length:118
Number of Molecules:2
Biological Source:Homo sapiens
Polymer Type:polypeptide(L)
Molecule:Fab 5E3 Light Chain
Chain IDs:D (auth: F), F (auth: H)
Chain Length:108
Number of Molecules:2
Biological Source:Homo sapiens
Ligand Molecules
Primary Citation
CryoEM structures of the multimeric secreted NS1, a major factor for dengue hemorrhagic fever.
Nat Commun 13 6756 6756 (2022)
PMID: 36347841 DOI: 10.1038/s41467-022-34415-1

Abstact

Dengue virus infection can cause dengue hemorrhagic fever (DHF). Dengue NS1 is multifunctional. The intracellular dimeric NS1 (iNS1) forms part of the viral replication complex. Previous studies suggest the extracellular secreted NS1 (sNS1), which is a major factor contributing to DHF, exists as hexamers. The structure of the iNS1 is well-characterised but not that of sNS1. Here we show by cryoEM that the recombinant sNS1 exists in multiple oligomeric states: the tetrameric (stable and loose conformation) and hexameric structures. Stability of the stable and loose tetramers is determined by the conformation of their N-terminal domain - elongated β-sheet or β-roll. Binding of an anti-NS1 Fab breaks the loose tetrameric and hexameric sNS1 into dimers, whereas the stable tetramer remains largely unbound. Our results show detailed quaternary organization of different oligomeric states of sNS1 and will contribute towards the design of dengue therapeutics.

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Disease

Primary Citation of related structures
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