7WTN image
Entry Detail
PDB ID:
7WTN
EMDB ID:
Keywords:
Title:
Cryo-EM structure of a yeast pre-40S ribosomal subunit - State Tsr1-1 (with Rps2)
Biological Source:
Source Organism:
PDB Version:
Deposition Date:
2022-02-05
Release Date:
2022-10-19
Method Details:
Experimental Method:
Resolution:
3.40 Å
Aggregation State:
PARTICLE
Reconstruction Method:
SINGLE PARTICLE
Macromolecular Entities
Polymer Type:polyribonucleotide
Description:18S rRNA
Chain IDs:A (auth: C2)
Chain Length:1800
Number of Molecules:1
Biological Source:Saccharomyces cerevisiae
Polymer Type:polypeptide(L)
Description:Pre-rRNA-processing protein PNO1
Chain IDs:Q (auth: CA)
Chain Length:274
Number of Molecules:1
Biological Source:Saccharomyces cerevisiae
Polymer Type:polypeptide(L)
Description:18S rRNA (guanine(1575)-N(7))-methyltransferase
Chain IDs:R (auth: CB)
Chain Length:275
Number of Molecules:1
Biological Source:Saccharomyces cerevisiae
Polymer Type:polypeptide(L)
Description:40S ribosomal protein S1-A
Chain IDs:B (auth: SB)
Chain Length:82
Number of Molecules:1
Biological Source:Saccharomyces cerevisiae
Polymer Type:polypeptide(L)
Description:40S ribosomal protein S2
Chain IDs:C (auth: SC)
Chain Length:254
Number of Molecules:1
Biological Source:Saccharomyces cerevisiae
Polymer Type:polypeptide(L)
Description:40S ribosomal protein S4-A
Chain IDs:D (auth: SE)
Chain Length:63
Number of Molecules:1
Biological Source:Saccharomyces cerevisiae
Polymer Type:polypeptide(L)
Description:40S ribosomal protein S6-A
Chain IDs:E (auth: SG)
Chain Length:236
Number of Molecules:1
Biological Source:Saccharomyces cerevisiae
Polymer Type:polypeptide(L)
Description:40S ribosomal protein S7-A
Chain IDs:F (auth: SH)
Chain Length:190
Number of Molecules:1
Biological Source:Saccharomyces cerevisiae
Polymer Type:polypeptide(L)
Description:40S ribosomal protein S8-A
Chain IDs:G (auth: SI)
Chain Length:200
Number of Molecules:1
Biological Source:Saccharomyces cerevisiae
Polymer Type:polypeptide(L)
Description:40S ribosomal protein S9-A
Chain IDs:H (auth: SJ)
Chain Length:197
Number of Molecules:1
Biological Source:Saccharomyces cerevisiae
Polymer Type:polypeptide(L)
Description:40S ribosomal protein S11-A
Chain IDs:I (auth: SL)
Chain Length:156
Number of Molecules:1
Biological Source:Saccharomyces cerevisiae
Polymer Type:polypeptide(L)
Description:40S ribosomal protein S13
Chain IDs:J (auth: SN)
Chain Length:151
Number of Molecules:1
Biological Source:Saccharomyces cerevisiae
Polymer Type:polypeptide(L)
Description:40S ribosomal protein S14-A
Chain IDs:K (auth: SO)
Chain Length:137
Number of Molecules:1
Biological Source:Saccharomyces cerevisiae
Polymer Type:polypeptide(L)
Description:40S ribosomal protein S22-A
Chain IDs:L (auth: SW)
Chain Length:130
Number of Molecules:1
Biological Source:Saccharomyces cerevisiae
Polymer Type:polypeptide(L)
Description:40S ribosomal protein S23-A
Chain IDs:M (auth: SX)
Chain Length:145
Number of Molecules:1
Biological Source:Saccharomyces cerevisiae
Polymer Type:polypeptide(L)
Description:40S ribosomal protein S24-A
Chain IDs:N (auth: SY)
Chain Length:135
Number of Molecules:1
Biological Source:Saccharomyces cerevisiae
Polymer Type:polypeptide(L)
Description:40S ribosomal protein S27-A
Chain IDs:O (auth: Sb)
Chain Length:82
Number of Molecules:1
Biological Source:Saccharomyces cerevisiae
Polymer Type:polypeptide(L)
Description:40S ribosomal protein S30-A
Chain IDs:P (auth: Se)
Chain Length:63
Number of Molecules:1
Biological Source:Saccharomyces cerevisiae
Ligand Molecules
Primary Citation
The nucleoplasmic phase of pre-40S formation prior to nuclear export.
Nucleic Acids Res. 50 11924 11937 (2022)
PMID: 36321656 DOI: 10.1093/nar/gkac961

Abstact

Biogenesis of the small ribosomal subunit in eukaryotes starts in the nucleolus with the formation of a 90S precursor and ends in the cytoplasm. Here, we elucidate the enigmatic structural transitions of assembly intermediates from human and yeast cells during the nucleoplasmic maturation phase. After dissociation of all 90S factors, the 40S body adopts a close-to-mature conformation, whereas the 3' major domain, later forming the 40S head, remains entirely immature. A first coordination is facilitated by the assembly factors TSR1 and BUD23-TRMT112, followed by re-positioning of RRP12 that is already recruited early to the 90S for further head rearrangements. Eventually, the uS2 cluster, CK1 (Hrr25 in yeast) and the export factor SLX9 associate with the pre-40S to provide export competence. These exemplary findings reveal the evolutionary conserved mechanism of how yeast and humans assemble the 40S ribosomal subunit, but reveal also a few minor differences.

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Primary Citation of related structures