7WTK image
Deposition Date 2022-02-04
Release Date 2022-12-14
Last Version Date 2025-07-02
Entry Detail
PDB ID:
7WTK
Keywords:
VIRAL PROTEIN/IMMUNE SYSTEM
Title:
SARS-CoV-2 Omicron variant spike in complex with Fab XGv286
Biological Source:
Source Organism:
Severe acute respiratory syndrome coronavirus 2 (Taxon ID: 2697049)
Homo sapiens (Taxon ID: 9606)
Host Organism:
Homo sapiens
Method Details:
Experimental Method:
ELECTRON MICROSCOPY
Resolution:
3.60 Å
Aggregation State:
PARTICLE
Reconstruction Method:
SINGLE PARTICLE
7WTK validation report
Macromolecular Entities
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:Spike glycoprotein
Gene (Uniprot):S
Mutagens:K986P, V987P
Chain IDs:A (auth: C), D (auth: B), E (auth: A)
Chain Length:1149
Number of Molecules:3
Biological Source:Severe acute respiratory syndrome coronavirus 2
UniProt ID:P0DTC2 Pfam ID:PF16451, PF09408, PF19209, PF01601
Polymer Type:polypeptide(L)
Molecule:Heavy chain of XGv286
Chain IDs:B (auth: H), F (auth: G), G (auth: I)
Chain Length:118
Number of Molecules:3
Biological Source:Homo sapiens
Polymer Type:polypeptide(L)
Molecule:Light chain of XGv286
Chain IDs:C (auth: L), H (auth: J), I (auth: K)
Chain Length:109
Number of Molecules:3
Biological Source:Homo sapiens
Ligand Molecules
NAG
Primary Citation
Selection and structural bases of potent broadly neutralizing antibodies from 3-dose vaccinees that are highly effective against diverse SARS-CoV-2 variants, including Omicron sublineages.
Cell Res. 32 691 694 (2022)
PMID: 35672388 DOI: 10.1038/s41422-022-00677-z
Primary Citation of related structures
7WTK