ISDA

Deposition Date 2022-02-04

Release Date 2022-12-14

Last Version Date 2025-06-25

Entry Detail

PDB ID:

7WTJ

Keywords:

IMMUNE SYSTEM/VIRAL PROTEIN

Title:

SARS-CoV-2 Omicron variant spike RBD in complex with Fab XGv286

Biological Source:

Source Organism:

Homo sapiens (Taxon ID: 9606)
Severe acute respiratory syndrome coronavirus 2 (Taxon ID: 2697049)

Host Organism:

Homo sapiens

Method Details:

Experimental Method:

ELECTRON MICROSCOPY

Resolution:

4.20 Å

Aggregation State:

PARTICLE

Reconstruction Method:

SINGLE PARTICLE

Download Validation Report

Macromolecular Entities

Protein Blast

Polymer Type:polypeptide(L)
Molecule:Spike protein S1
Gene (Uniprot):S
Chain IDs:C (auth: E)
Chain Length:201
Number of Molecules:1
Biological Source:Severe acute respiratory syndrome coronavirus 2

UniProt ID:P0DTC2 Pfam ID:PF09408

Polymer Type:polypeptide(L)
Molecule:Heavy chain of XGv286
Chain IDs:A (auth: H)
Chain Length:118
Number of Molecules:1
Biological Source:Homo sapiens

Polymer Type:polypeptide(L)
Molecule:Light chain of XGv286
Chain IDs:B (auth: L)
Chain Length:109
Number of Molecules:1
Biological Source:Homo sapiens

Ligand Molecules

Primary Citation

Selection and structural bases of potent broadly neutralizing antibodies from 3-dose vaccinees that are highly effective against diverse SARS-CoV-2 variants, including Omicron sublineages.

Wang, L, Fu, W, Bao, L, Jia, Z, Zhang, Y, Zhou, Y, Wu, W, Wu, J, Zhang, Q, Gao, Y, Wang, K, Wang, Q, Qin, C, Wang, X.Show

Cell Res. 32 691 694 (2022)

PMID: 35672388 DOI: 10.1038/s41422-022-00677-z

Primary Citation of related structures