ISDA

Entry Detail

PDB ID:

7WTI

EMDB ID:

EMD-32787

Keywords:

VIRAL PROTEIN/IMMUNE SYSTEM

Title:

SARS-CoV-2 Omicron variant spike in complex with Fab XGv264

Biological Source:

Source Organism:

Severe acute respiratory syndrome coronavirus 2, Homo sapiens

Host Organism:

Homo sapiens

PDB Version:

Deposition Date:

2022-02-04

Release Date:

2022-12-21

Method Details:

Experimental Method:

ELECTRON MICROSCOPY

Resolution:

3.80 Å

Aggregation State:

PARTICLE

Reconstruction Method:

SINGLE PARTICLE

Download Validation Report

Macromolecular Entities

Protein Blast

Polymer Type:polypeptide(L)
Description:Spike glycoprotein
Mutations:R683S, R685S, F817P, A892P, A899P, A942P, K986P, V987P
Chain IDs:A, B, C
Chain Length:1270
Number of Molecules:3
Biological Source:Severe acute respiratory syndrome coronavirus 2

UniProt ID:P0DTC2 Pfam ID:PF16451, PF09408, PF19209, PF01601

Polymer Type:polypeptide(L)
Description:Heavy chain of XGv264
Chain IDs:D (auth: H), E (auth: I), H (auth: G)
Chain Length:118
Number of Molecules:3
Biological Source:Homo sapiens

Polymer Type:polypeptide(L)
Description:Light chain of XGv264
Chain IDs:F (auth: K), G (auth: L), I (auth: J)
Chain Length:111
Number of Molecules:3
Biological Source:Homo sapiens

Ligand Molecules

NAG

Primary Citation

Selection and structural bases of potent broadly neutralizing antibodies from 3-dose vaccinees that are highly effective against diverse SARS-CoV-2 variants, including Omicron sublineages.

Wang, L, Fu, W, Bao, L, Jia, Z, Zhang, Y, Zhou, Y, Wu, W, Wu, J, Zhang, Q, Gao, Y, Wang, K, Wang, Q, Qin, C, Wang, X.Show

Cell Res. 32 691 694 (2022)

PMID: 35672388 DOI: 10.1038/s41422-022-00677-z

Primary Citation of related structures