7WTI image
Deposition Date 2022-02-04
Release Date 2022-12-21
Last Version Date 2025-07-02
Entry Detail
PDB ID:
7WTI
Keywords:
VIRAL PROTEIN/IMMUNE SYSTEM
Title:
SARS-CoV-2 Omicron variant spike in complex with Fab XGv264
Biological Source:
Source Organism:
Severe acute respiratory syndrome coronavirus 2 (Taxon ID: 2697049)
Homo sapiens (Taxon ID: 9606)
Host Organism:
Homo sapiens
Method Details:
Experimental Method:
ELECTRON MICROSCOPY
Resolution:
3.80 Å
Aggregation State:
PARTICLE
Reconstruction Method:
SINGLE PARTICLE
7WTI validation report
Macromolecular Entities
Protein Blast
Polymer Type:polypeptide(L)
Molecule:Spike glycoprotein
Gene (Uniprot):S
Mutations:R683S, R685S, F817P, A892P, A899P, A942P, K986P, V987P
Chain IDs:A, B, C
Chain Length:1270
Number of Molecules:3
Biological Source:Severe acute respiratory syndrome coronavirus 2
UniProt ID:P0DTC2 Pfam ID:PF16451, PF09408, PF19209, PF01601
Polymer Type:polypeptide(L)
Molecule:Heavy chain of XGv264
Chain IDs:D (auth: H), E (auth: I), H (auth: G)
Chain Length:118
Number of Molecules:3
Biological Source:Homo sapiens
Polymer Type:polypeptide(L)
Molecule:Light chain of XGv264
Chain IDs:F (auth: K), G (auth: L), I (auth: J)
Chain Length:111
Number of Molecules:3
Biological Source:Homo sapiens
Ligand Molecules
NAG
Primary Citation
Selection and structural bases of potent broadly neutralizing antibodies from 3-dose vaccinees that are highly effective against diverse SARS-CoV-2 variants, including Omicron sublineages.
Cell Res. 32 691 694 (2022)
PMID: 35672388 DOI: 10.1038/s41422-022-00677-z
Primary Citation of related structures
7WTI