ISDA: 7WTF

Deposition Date 2022-02-04

Release Date 2022-12-14

Last Version Date 2025-07-02

Entry Detail

PDB ID:

7WTF

Keywords:

IMMUNE SYSTEM/VIRAL PROTEIN

Title:

SARS-CoV-2 Omicron variant spike in complex with Fab XGv051

Biological Source:

Source Organism:

Homo sapiens (Taxon ID: 9606)
Severe acute respiratory syndrome coronavirus 2 (Taxon ID: 2697049)

Host Organism:

Homo sapiens

Method Details:

Experimental Method:

ELECTRON MICROSCOPY

Resolution:

3.00 Å

Aggregation State:

PARTICLE

Reconstruction Method:

SINGLE PARTICLE

Download Validation Report

Macromolecular Entities

Structures with similar UniProt ID

Protein Blast

Polymer Type:polypeptide(L)
Molecule:Spike glycoprotein
Gene (Uniprot):S
Mutagens:deletion, insersion, K986P, V987P
Chain IDs:C (auth: B), D (auth: C), E (auth: D)
Chain Length:1149
Number of Molecules:3
Biological Source:Severe acute respiratory syndrome coronavirus 2

UniProt ID:P0DTC2 Pfam ID:PF16451, PF09408, PF19209, PF01601

Polymer Type:polypeptide(L)
Molecule:Heavy chain of XGv051
Chain IDs:A (auth: H), F (auth: G), H (auth: I)
Chain Length:120
Number of Molecules:3
Biological Source:Homo sapiens

Polymer Type:polypeptide(L)
Molecule:Light chain of XGv051
Chain IDs:B (auth: L), G (auth: J), I (auth: K)
Chain Length:104
Number of Molecules:3
Biological Source:Homo sapiens

Ligand Molecules

NAG

Primary Citation

Selection and structural bases of potent broadly neutralizing antibodies from 3-dose vaccinees that are highly effective against diverse SARS-CoV-2 variants, including Omicron sublineages.

Wang, L, Fu, W, Bao, L, Jia, Z, Zhang, Y, Zhou, Y, Wu, W, Wu, J, Zhang, Q, Gao, Y, Wang, K, Wang, Q, Qin, C, Wang, X.Show

Cell Res. 32 691 694 (2022)

PMID: 35672388 DOI: 10.1038/s41422-022-00677-z

Primary Citation of related structures