ISDA

Deposition Date 2022-01-22

Release Date 2022-07-20

Last Version Date 2025-06-25

Entry Detail

PDB ID:

7WP0

Keywords:

IMMUNE SYSTEM/VIRAL PROTEIN

Title:

Cryo-EM structure of SARS-CoV-2 Delta S6P trimer in complex with neutralizing antibody VacW-209 (local refinement)

Biological Source:

Source Organism:

Homo sapiens (Taxon ID: 9606)
Severe acute respiratory syndrome coronavirus 2 (Taxon ID: 2697049)

Host Organism:

Homo sapiens

Method Details:

Experimental Method:

ELECTRON MICROSCOPY

Resolution:

3.71 Å

Aggregation State:

PARTICLE

Reconstruction Method:

SINGLE PARTICLE

Download Validation Report

Macromolecular Entities

Protein Blast

Polymer Type:polypeptide(L)
Molecule:Spike protein S1
Gene (Uniprot):S
Chain IDs:C (auth: F)
Chain Length:189
Number of Molecules:1
Biological Source:Severe acute respiratory syndrome coronavirus 2

UniProt ID:P0DTC2 Pfam ID:PF09408

Polymer Type:polypeptide(L)
Molecule:VacW-209 heavy chain
Chain IDs:B (auth: H)
Chain Length:131
Number of Molecules:1
Biological Source:Homo sapiens

Protein Blast

Polymer Type:polypeptide(L)
Molecule:IG c335_light_IGLV1-40_IGLJ3
Chain IDs:A (auth: L)
Chain Length:111
Number of Molecules:1
Biological Source:Homo sapiens

UniProt ID:A0A5C2GQT9 Pfam ID:PF07686

Ligand Molecules

NAG

Primary Citation

Immune escape by SARS-CoV-2 Omicron variant and structural basis of its effective neutralization by a broad neutralizing human antibody VacW-209.

Ju, B, Zheng, Q, Guo, H, Fan, Q, Li, T, Song, S, Sun, H, Shen, S, Zhou, X, Xue, W, Cui, L, Zhou, B, Li, S, Xia, N, Zhang, Z.Show

Cell Res. 32 491 494 (2022)

PMID: 35260792 DOI: 10.1038/s41422-022-00638-6

Primary Citation of related structures