7WJV image
Entry Detail
PDB ID:
7WJV
Title:
Crystal structure of human liver FBPase complexed with an covalent inhibitor
Biological Source:
Source Organism:
PDB Version:
Deposition Date:
2022-01-08
Release Date:
2022-07-13
Method Details:
Experimental Method:
Resolution:
1.72 Å
R-Value Free:
0.19
R-Value Work:
0.17
R-Value Observed:
0.17
Space Group:
P 21 21 21
Macromolecular Entities
Polymer Type:polypeptide(L)
Description:Fructose-1,6-bisphosphatase 1
Chain IDs:A, B, C, D
Chain Length:348
Number of Molecules:4
Biological Source:Homo sapiens
Primary Citation
N -Acylamino Saccharin as an Emerging Cysteine-Directed Covalent Warhead and Its Application in the Identification of Novel FBPase Inhibitors toward Glucose Reduction.
J.Med.Chem. 65 9126 9143 (2022)
PMID: 35786925 DOI: 10.1021/acs.jmedchem.2c00336

Abstact

With a resurgence of covalent drugs, there is an urgent need for the identification of new moieties capable of cysteine bond formation. Herein, we report on the N-acylamino saccharin moieties capable of novel covalent reactions with cysteine. Their utility as alternative electrophilic warheads was demonstrated through the covalent modification of fructose-1,6-bisphosphatase (FBPase), a promising target associated with cancer and type 2 diabetes. The cocrystal structure of title compound W8 bound with FBPase unexpectedly revealed that the N-acylamino saccharin moiety worked as an electrophile warhead that covalently modified the noncatalytic C128 site in FBPase while releasing saccharin, suggesting a previously undiscovered covalent reaction mechanism of saccharin derivatives with cysteine. Treatment of title compound W8 displayed potent inhibition of glucose production in vitro and in vivo. This newly discovered reactive warhead supplements the current repertoire of cysteine covalent modifiers while avoiding some of the limitations generally associated with established moieties.

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