7WHK image
Deposition Date 2021-12-30
Release Date 2022-05-11
Last Version Date 2024-10-30
Entry Detail
PDB ID:
7WHK
Keywords:
Title:
The state 3 complex structure of Omicron spike with Bn03 (2-up RBD, 5 nanobodies)
Biological Source:
Host Organism:
Method Details:
Experimental Method:
Resolution:
3.01 Å
Aggregation State:
PARTICLE
Reconstruction Method:
SINGLE PARTICLE
Macromolecular Entities
Polymer Type:polypeptide(L)
Molecule:Spike glycoprotein
Gene (Uniprot):S
Mutations:hexaPro mutations
Chain IDs:A, B, C
Chain Length:1285
Number of Molecules:3
Biological Source:Severe acute respiratory syndrome coronavirus 2
Polymer Type:polypeptide(L)
Molecule:Bn03_nano2
Chain IDs:D, H
Chain Length:120
Number of Molecules:2
Biological Source:Homo sapiens
Polymer Type:polypeptide(L)
Molecule:Bn03_nano1
Chain IDs:E, F, G
Chain Length:138
Number of Molecules:3
Biological Source:Homo sapiens
Ligand Molecules
Primary Citation
Broad neutralization of SARS-CoV-2 variants by an inhalable bispecific single-domain antibody.
Cell 185 1389 1401.e18 (2022)
PMID: 35344711 DOI: 10.1016/j.cell.2022.03.009

Abstact

The effectiveness of SARS-CoV-2 vaccines and therapeutic antibodies have been limited by the continuous emergence of viral variants and by the restricted diffusion of antibodies from circulation into the sites of respiratory virus infection. Here, we report the identification of two highly conserved regions on the Omicron variant receptor-binding domain recognized by broadly neutralizing antibodies. Furthermore, we generated a bispecific single-domain antibody that was able to simultaneously and synergistically bind these two regions on a single Omicron variant receptor-binding domain as revealed by cryo-EM structures. We demonstrated that this bispecific antibody can be effectively delivered to lung via inhalation administration and exhibits exquisite neutralization breadth and therapeutic efficacy in mouse models of SARS-CoV-2 infections. Importantly, this study also deciphered an uncommon and highly conserved cryptic epitope within the spike trimeric interface that may have implications for the design of broadly protective SARS-CoV-2 vaccines and therapeutics.

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Primary Citation of related structures