7WG5 image
Deposition Date 2021-12-28
Release Date 2022-03-16
Last Version Date 2024-11-13
Entry Detail
PDB ID:
7WG5
Title:
Cyclic electron transport supercomplex NDH-PSI from Arabidopsis
Biological Source:
Source Organism:
Method Details:
Experimental Method:
Resolution:
3.89 Å
Aggregation State:
PARTICLE
Reconstruction Method:
SINGLE PARTICLE
Macromolecular Entities
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:NAD(P)H-quinone oxidoreductase subunit 1, chloroplastic
Gene (Uniprot):ndhA
Chain IDs:GA (auth: A)
Chain Length:360
Number of Molecules:1
Biological Source:Arabidopsis thaliana
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:Chlorophyll a-b binding protein 6, chloroplastic
Gene (Uniprot):LHCA1
Chain IDs:M (auth: A1), CA (auth: B1)
Chain Length:241
Number of Molecules:2
Biological Source:Arabidopsis thaliana
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:Photosystem I chlorophyll a/b-binding protein 3-1, chloroplastic
Gene (Uniprot):LHCA3
Chain IDs:N (auth: A3), EA (auth: B3)
Chain Length:273
Number of Molecules:2
Biological Source:Arabidopsis thaliana
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:Chlorophyll a-b binding protein 4, chloroplastic
Gene (Uniprot):LHCA4
Chain IDs:O (auth: A4)
Chain Length:251
Number of Molecules:1
Biological Source:Arabidopsis thaliana
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:Photosystem I chlorophyll a/b-binding protein 6, chloroplastic
Gene (Uniprot):LHCA6
Chain IDs:P (auth: A6)
Chain Length:270
Number of Molecules:1
Biological Source:Arabidopsis thaliana
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:Photosystem I P700 chlorophyll a apoprotein A1
Gene (Uniprot):psaA
Chain IDs:A (auth: AA), Q (auth: BA)
Chain Length:750
Number of Molecules:2
Biological Source:Arabidopsis thaliana
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:Photosystem I P700 chlorophyll a apoprotein A2
Gene (Uniprot):psaB
Chain IDs:B (auth: AB), R (auth: BB)
Chain Length:734
Number of Molecules:2
Biological Source:Arabidopsis thaliana
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:Photosystem I iron-sulfur center
Gene (Uniprot):psaC
Chain IDs:C (auth: AC), S (auth: BC)
Chain Length:81
Number of Molecules:2
Biological Source:Arabidopsis thaliana
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:Photosystem I reaction center subunit II-2, chloroplastic
Gene (Uniprot):PSAD2
Chain IDs:D (auth: AD), T (auth: BD)
Chain Length:204
Number of Molecules:2
Biological Source:Arabidopsis thaliana
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:Photosystem I reaction center subunit IV A, chloroplastic
Gene (Uniprot):PSAE1
Chain IDs:E (auth: AE), U (auth: BE)
Chain Length:143
Number of Molecules:2
Biological Source:Arabidopsis thaliana
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:Photosystem I reaction center subunit III, chloroplastic
Gene (Uniprot):PSAF
Chain IDs:F (auth: AF), V (auth: BF)
Chain Length:221
Number of Molecules:2
Biological Source:Arabidopsis thaliana
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:Photosystem I reaction center subunit V, chloroplastic
Gene (Uniprot):PSAG
Chain IDs:G (auth: AG), W (auth: BG)
Chain Length:160
Number of Molecules:2
Biological Source:Arabidopsis thaliana
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:Photosystem I reaction center subunit VI-2, chloroplastic
Gene (Uniprot):PSAH2
Chain IDs:H (auth: AH), X (auth: BH)
Chain Length:145
Number of Molecules:2
Biological Source:Arabidopsis thaliana
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:Photosystem I reaction center subunit VIII
Gene (Uniprot):psaI
Chain IDs:I (auth: AI), Y (auth: BI)
Chain Length:37
Number of Molecules:2
Biological Source:Arabidopsis thaliana
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:Photosystem I reaction center subunit IX
Gene (Uniprot):psaJ
Chain IDs:J (auth: AJ), Z (auth: BJ)
Chain Length:44
Number of Molecules:2
Biological Source:Arabidopsis thaliana
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:Photosystem I reaction center subunit psaK, chloroplastic
Gene (Uniprot):PSAK
Chain IDs:K (auth: AK), AA (auth: BK)
Chain Length:130
Number of Molecules:2
Biological Source:Arabidopsis thaliana
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:Photosystem I reaction center subunit XI, chloroplastic
Gene (Uniprot):PSAL
Chain IDs:L (auth: AL), BA (auth: BL)
Chain Length:219
Number of Molecules:2
Biological Source:Arabidopsis thaliana
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:NAD(P)H-quinone oxidoreductase subunit 2, chloroplastic
Gene (Uniprot):ndhB
Chain IDs:HA (auth: B)
Chain Length:348
Number of Molecules:1
Biological Source:Arabidopsis thaliana
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:Photosystem I chlorophyll a/b-binding protein 2, chloroplastic
Gene (Uniprot):LHCA2
Chain IDs:DA (auth: B2)
Chain Length:257
Number of Molecules:1
Biological Source:Arabidopsis thaliana
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:Photosystem I chlorophyll a/b-binding protein 5, chloroplastic
Gene (Uniprot):LHCA5
Chain IDs:FA (auth: B5)
Chain Length:256
Number of Molecules:1
Biological Source:Arabidopsis thaliana
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:NAD(P)H-quinone oxidoreductase subunit 3, chloroplastic
Gene (Uniprot):ndhC
Chain IDs:IA (auth: C)
Chain Length:204
Number of Molecules:1
Biological Source:Arabidopsis thaliana
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:NAD(P)H-quinone oxidoreductase chain 4, chloroplastic
Gene (Uniprot):ndhD
Chain IDs:JA (auth: D)
Chain Length:506
Number of Molecules:1
Biological Source:Arabidopsis thaliana
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:NAD(P)H-quinone oxidoreductase subunit 4L, chloroplastic
Gene (Uniprot):ndhE
Chain IDs:KA (auth: E)
Chain Length:212
Number of Molecules:1
Biological Source:Arabidopsis thaliana
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:NAD(P)H-quinone oxidoreductase subunit 5, chloroplastic
Gene (Uniprot):ndhF
Chain IDs:LA (auth: F)
Chain Length:238
Number of Molecules:1
Biological Source:Arabidopsis thaliana
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:NAD(P)H-quinone oxidoreductase subunit 6, chloroplastic
Gene (Uniprot):ndhG
Chain IDs:MA (auth: G)
Chain Length:190
Number of Molecules:1
Biological Source:Arabidopsis thaliana
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:NAD(P)H-quinone oxidoreductase subunit H, chloroplastic
Gene (Uniprot):ndhH
Chain IDs:XA (auth: H)
Chain Length:220
Number of Molecules:1
Biological Source:Arabidopsis thaliana
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:NAD(P)H-quinone oxidoreductase subunit I, chloroplastic
Gene (Uniprot):ndhI
Chain IDs:YA (auth: I)
Chain Length:172
Number of Molecules:1
Biological Source:Arabidopsis thaliana
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:NAD(P)H-quinone oxidoreductase subunit J, chloroplastic
Gene (Uniprot):ndhJ
Chain IDs:ZA (auth: J)
Chain Length:158
Number of Molecules:1
Biological Source:Arabidopsis thaliana
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:NAD(P)H-quinone oxidoreductase subunit K, chloroplastic
Gene (Uniprot):ndhK
Chain IDs:AB (auth: K)
Chain Length:225
Number of Molecules:1
Biological Source:Arabidopsis thaliana
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:NAD(P)H-quinone oxidoreductase subunit L, chloroplastic
Gene (Uniprot):ndhL
Chain IDs:BB (auth: L)
Chain Length:191
Number of Molecules:1
Biological Source:Arabidopsis thaliana
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:NAD(P)H-quinone oxidoreductase subunit M, chloroplastic
Gene (Uniprot):ndhM
Chain IDs:CB (auth: M)
Chain Length:217
Number of Molecules:1
Biological Source:Arabidopsis thaliana
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:NAD(P)H-quinone oxidoreductase subunit N, chloroplastic
Gene (Uniprot):ndhN
Chain IDs:DB (auth: N)
Chain Length:209
Number of Molecules:1
Biological Source:Arabidopsis thaliana
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:NdhO
Gene (Uniprot):C24_LOCUS6416
Chain IDs:EB (auth: O)
Chain Length:158
Number of Molecules:1
Biological Source:Arabidopsis thaliana
Polymer Type:polypeptide(L)
Molecule:NdhT
Chain IDs:FB (auth: T)
Chain Length:122
Number of Molecules:1
Biological Source:Arabidopsis thaliana
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:Photosynthetic NDH subunit of subcomplex B 1, chloroplastic
Gene (Uniprot):PNSB1
Chain IDs:NA (auth: a)
Chain Length:360
Number of Molecules:1
Biological Source:Arabidopsis thaliana
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:Photosynthetic NDH subunit of subcomplex B 2, chloroplastic
Gene (Uniprot):PNSB2
Chain IDs:OA (auth: b)
Chain Length:348
Number of Molecules:1
Biological Source:Arabidopsis thaliana
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:Photosynthetic NDH subunit of subcomplex B 3, chloroplastic
Gene (Uniprot):PNSB3
Chain IDs:PA (auth: c)
Chain Length:204
Number of Molecules:1
Biological Source:Arabidopsis thaliana
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:NDH dependent flow 6
Gene (Uniprot):PNSB4
Chain IDs:QA (auth: d)
Chain Length:506
Number of Molecules:1
Biological Source:Arabidopsis thaliana
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:Photosynthetic NDH subunit of subcomplex B 5, chloroplastic
Gene (Uniprot):PNSB5
Chain IDs:RA (auth: e)
Chain Length:212
Number of Molecules:1
Biological Source:Arabidopsis thaliana
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:Photosynthetic NDH subunit of lumenal location 1, chloroplastic
Gene (Uniprot):PNSL1
Chain IDs:SA (auth: f)
Chain Length:238
Number of Molecules:1
Biological Source:Arabidopsis thaliana
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:Photosynthetic NDH subunit of lumenal location 2, chloroplastic
Gene (Uniprot):PNSL2
Chain IDs:TA (auth: g)
Chain Length:190
Number of Molecules:1
Biological Source:Arabidopsis thaliana
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:Photosynthetic NDH subunit of lumenal location 3, chloroplastic
Gene (Uniprot):PNSL3
Chain IDs:UA (auth: h)
Chain Length:220
Number of Molecules:1
Biological Source:Arabidopsis thaliana
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:Photosynthetic NDH subunit of lumenal location 4, chloroplastic
Gene (Uniprot):PNSL4
Chain IDs:VA (auth: i)
Chain Length:172
Number of Molecules:1
Biological Source:Arabidopsis thaliana
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:Isoform 2 of Photosynthetic NDH subunit of lumenal location 5, chloroplastic
Gene (Uniprot):PNSL5
Chain IDs:WA (auth: j)
Chain Length:158
Number of Molecules:1
Biological Source:Arabidopsis thaliana
Primary Citation
Supramolecular assembly of chloroplast NADH dehydrogenase-like complex with photosystem I from Arabidopsis thaliana.
Mol Plant 15 454 467 (2022)
PMID: 35123031 DOI: 10.1016/j.molp.2022.01.020

Abstact

Cyclic electron transport/flow (CET/CEF) in chloroplasts is a regulatory process essential for the optimization of plant photosynthetic efficiency. A crucial CEF pathway is catalyzed by a membrane-embedded NADH dehydrogenase-like (NDH) complex that contains at least 29 protein subunits and associates with photosystem I (PSI) to form the NDH-PSI supercomplex. Here, we report the 3.9 Å resolution structure of the Arabidopsis thaliana NDH-PSI (AtNDH-PSI) supercomplex. We constructed structural models for 26 AtNDH subunits, among which 11 are unique to chloroplasts and stabilize the core part of the NDH complex. In the supercomplex, one NDH can bind up to two PSI-light-harvesting complex I (PSI-LHCI) complexes at both sides of its membrane arm. Two minor LHCIs, Lhca5 and Lhca6, each present in one PSI-LHCI, interact with NDH and contribute to supercomplex formation and stabilization. Collectively, our study reveals the structural details of the AtNDH-PSI supercomplex assembly and provides a molecular basis for further investigation of the regulatory mechanism of CEF in plants.

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