7WG3 image
Deposition Date 2021-12-28
Release Date 2022-11-09
Last Version Date 2024-11-13
Entry Detail
PDB ID:
7WG3
Keywords:
Title:
Structural basis of interleukin-17B receptor in complex with a neutralizing antibody D9 for guiding humanization and affinity maturation for cancer therapy
Biological Source:
Source Organism:
Mus musculus (Taxon ID: 10090)
Bos taurus (Taxon ID: 9913)
Host Organism:
Method Details:
Experimental Method:
Resolution:
2.19 Å
R-Value Free:
0.23
R-Value Work:
0.19
R-Value Observed:
0.19
Space Group:
P 1 21 1
Macromolecular Entities
Polymer Type:polypeptide(L)
Molecule:Light chain of D9 Fab
Chain IDs:A, B, C, D
Chain Length:213
Number of Molecules:4
Biological Source:Mus musculus
Polymer Type:polypeptide(L)
Molecule:Heavy chain of D9 Fab
Chain IDs:E, F, G, H
Chain Length:220
Number of Molecules:4
Biological Source:Mus musculus
Polymer Type:polypeptide(L)
Molecule:IL17RB protein
Gene (Uniprot):IL17RB
Chain IDs:I, J, K, L
Chain Length:255
Number of Molecules:4
Biological Source:Bos taurus
Ligand Molecules
Primary Citation
Structural basis of interleukin-17B receptor in complex with a neutralizing antibody for guiding humanization and affinity maturation.
Cell Rep 41 111555 111555 (2022)
PMID: 36288706 DOI: 10.1016/j.celrep.2022.111555

Abstact

Upregulation of interleukin-17 receptor B (IL-17RB) is known to be oncogenic, while other IL-17 receptors and ligands are generally involved in pro-inflammatory pathways. We identify a mouse neutralizing monoclonal antibody (mAb) D9, which blocks the IL-17RB/IL-17B pathway and inhibits pancreatic tumorigenesis in an orthotopic mouse model. The X-ray crystal structure of the IL-17RB ectodomain in complex with its neutralizing antibody D9 shows that D9 binds to a predicted ligand binding interface and engages with the A'-A loop of IL-17RB fibronectin III domain 1 in a unique conformational state. This structure also provides important paratope information to guide the design of antibody humanization and affinity maturation of D9, resulting in a humanized 1B12 antibody with marginal affinity loss and effective neutralization of IL-17B/IL-17RB signaling to impede tumorigenesis in a mouse xenograft model.

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Primary Citation of related structures