7WFF image
Deposition Date 2021-12-26
Release Date 2022-03-16
Last Version Date 2025-06-25
Entry Detail
PDB ID:
7WFF
Title:
Subcomplexes B,M and L in the Cylic electron transfer supercomplex NDH-PSI from Arabidopsis
Biological Source:
Source Organism:
Method Details:
Experimental Method:
Resolution:
3.59 Å
Aggregation State:
PARTICLE
Reconstruction Method:
SINGLE PARTICLE
Macromolecular Entities
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:NAD(P)H-quinone oxidoreductase subunit 1, chloroplastic
Gene (Uniprot):ndhA
Chain IDs:A
Chain Length:461
Number of Molecules:1
Biological Source:Arabidopsis thaliana
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:NAD(P)H-quinone oxidoreductase subunit 2, chloroplastic
Gene (Uniprot):ndhB
Chain IDs:B
Chain Length:348
Number of Molecules:1
Biological Source:Arabidopsis thaliana
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:NAD(P)H-quinone oxidoreductase subunit 3, chloroplastic
Gene (Uniprot):ndhC
Chain IDs:C
Chain Length:204
Number of Molecules:1
Biological Source:Arabidopsis thaliana
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:NAD(P)H-quinone oxidoreductase chain 4, chloroplastic
Chain IDs:D
Chain Length:161
Number of Molecules:1
Biological Source:Arabidopsis thaliana
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:NAD(P)H-quinone oxidoreductase subunit 4L, chloroplastic
Gene (Uniprot):ndhE
Chain IDs:E
Chain Length:101
Number of Molecules:1
Biological Source:Arabidopsis thaliana
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:NAD(P)H-quinone oxidoreductase subunit 5, chloroplastic
Gene (Uniprot):ndhF
Chain IDs:F
Chain Length:238
Number of Molecules:1
Biological Source:Arabidopsis thaliana
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:NAD(P)H-quinone oxidoreductase subunit 6, chloroplastic
Gene (Uniprot):ndhG
Chain IDs:G
Chain Length:190
Number of Molecules:1
Biological Source:Arabidopsis thaliana
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:Photosynthetic NDH subunit of subcomplex B 1, chloroplastic
Gene (Uniprot):PNSB1
Chain IDs:H (auth: a)
Chain Length:461
Number of Molecules:1
Biological Source:Arabidopsis thaliana
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:Photosynthetic NDH subunit of subcomplex B 2, chloroplastic
Gene (Uniprot):PNSB2
Chain IDs:I (auth: b)
Chain Length:348
Number of Molecules:1
Biological Source:Arabidopsis thaliana
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:Photosynthetic NDH subunit of subcomplex B 3, chloroplastic
Gene (Uniprot):PNSB3
Chain IDs:J (auth: c)
Chain Length:204
Number of Molecules:1
Biological Source:Arabidopsis thaliana
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:NDH dependent flow 6
Gene (Uniprot):PNSB4
Chain IDs:K (auth: d)
Chain Length:161
Number of Molecules:1
Biological Source:Arabidopsis thaliana
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:Photosynthetic NDH subunit of subcomplex B 5, chloroplastic
Gene (Uniprot):PNSB5
Chain IDs:L (auth: e)
Chain Length:101
Number of Molecules:1
Biological Source:Arabidopsis thaliana
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:Photosynthetic NDH subunit of lumenal location 1, chloroplastic
Gene (Uniprot):PNSL1
Chain IDs:M (auth: f)
Chain Length:238
Number of Molecules:1
Biological Source:Arabidopsis thaliana
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:Photosynthetic NDH subunit of lumenal location 2, chloroplastic
Gene (Uniprot):PNSL2
Chain IDs:N (auth: g)
Chain Length:190
Number of Molecules:1
Biological Source:Arabidopsis thaliana
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:Photosynthetic NDH subunit of lumenal location 3, chloroplastic
Gene (Uniprot):PNSL3
Chain IDs:O (auth: h)
Chain Length:220
Number of Molecules:1
Biological Source:Arabidopsis thaliana
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:Photosynthetic NDH subunit of lumenal location 4, chloroplastic
Gene (Uniprot):PNSL4
Chain IDs:P (auth: i)
Chain Length:217
Number of Molecules:1
Biological Source:Arabidopsis thaliana
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:Isoform 2 of Photosynthetic NDH subunit of lumenal location 5, chloroplastic
Gene (Uniprot):PNSL5
Chain IDs:Q (auth: j)
Chain Length:255
Number of Molecules:1
Biological Source:Arabidopsis thaliana
Primary Citation
Supramolecular assembly of chloroplast NADH dehydrogenase-like complex with photosystem I from Arabidopsis thaliana.
Mol Plant 15 454 467 (2022)
PMID: 35123031 DOI: 10.1016/j.molp.2022.01.020

Abstact

Cyclic electron transport/flow (CET/CEF) in chloroplasts is a regulatory process essential for the optimization of plant photosynthetic efficiency. A crucial CEF pathway is catalyzed by a membrane-embedded NADH dehydrogenase-like (NDH) complex that contains at least 29 protein subunits and associates with photosystem I (PSI) to form the NDH-PSI supercomplex. Here, we report the 3.9 Å resolution structure of the Arabidopsis thaliana NDH-PSI (AtNDH-PSI) supercomplex. We constructed structural models for 26 AtNDH subunits, among which 11 are unique to chloroplasts and stabilize the core part of the NDH complex. In the supercomplex, one NDH can bind up to two PSI-light-harvesting complex I (PSI-LHCI) complexes at both sides of its membrane arm. Two minor LHCIs, Lhca5 and Lhca6, each present in one PSI-LHCI, interact with NDH and contribute to supercomplex formation and stabilization. Collectively, our study reveals the structural details of the AtNDH-PSI supercomplex assembly and provides a molecular basis for further investigation of the regulatory mechanism of CEF in plants.

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