7WEX image
Entry Detail
PDB ID:
7WEX
Keywords:
Title:
The crystal structure of substrate-free CYP107X1 from Streptomyces avermitilis
Biological Source:
PDB Version:
Deposition Date:
2021-12-24
Release Date:
2022-06-29
Method Details:
Experimental Method:
Resolution:
1.99 Å
R-Value Free:
0.24
R-Value Work:
0.17
R-Value Observed:
0.18
Space Group:
P 63
Macromolecular Entities
Polymer Type:polypeptide(L)
Description:Cytochrome P450 hydroxylase
Chain IDs:A
Chain Length:408
Number of Molecules:1
Biological Source:Streptomyces avermitilis (strain ATCC 31267 / DSM 46492 / JCM 5070 / NBRC 14893 / NCIMB 12804 / NRRL 8165 / MA-4680)
Primary Citation
The 16 alpha-Hydroxylation of Progesterone by Cytochrome P450 107X1 from Streptomyces avermitilis.
Chem.Biodivers. 19 e202200177 e202200177 (2022)
PMID: 35426465 DOI: 10.1002/cbdv.202200177

Abstact

Cytochrome P450 enzymes (CYPs or P450s) are ubiquitous heme-dependent enzymes that catalyze the monooxygenation of non-activated C-H bonds to modify the structure of the substrate. In this study, we heterologously expressed CYP107X1 from Streptomyces avermitilis and conducted in vitro substrate screening using the alternative redox partners putidaredoxin and putidaredoxin reductase. CYP107X1 catalyzed the 16α-hydroxylation of progesterone with regio- and stereoselectivity. The spectroscopic analyses showed that CYP107X1 bound progesterone with a relatively high Kd value of 65.3±38.9 μM. The Km and kcat values for progesterone were estimated to be 47.7±12.0 μM and 0.30 min-1 , respectively. Furthermore, a crystal structure was obtained of CYP107X1 bound with glycerol from the buffer solution. Interestingly, a conserved threonine was replaced with asparagine in CYP107X1, indicating that it may adopt an unnatural proton transfer process and play a crucial role in its catalytic activity.

Legend

Protein

Chemical

Disease

Primary Citation of related structures