7W75 image
Deposition Date 2021-12-03
Release Date 2023-03-29
Last Version Date 2024-10-23
Entry Detail
PDB ID:
7W75
Keywords:
Title:
Crystal structure of the K. lactis Bre1 RBD in complex with Rad6, crystal form I
Biological Source:
Source Organism:
Host Organism:
Method Details:
Experimental Method:
Resolution:
3.20 Å
R-Value Free:
0.26
R-Value Work:
0.21
R-Value Observed:
0.21
Space Group:
P 65 2 2
Macromolecular Entities
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:Ubiquitin-conjugating enzyme E2 2
Gene (Uniprot):UBC2
Chain IDs:A, B
Chain Length:167
Number of Molecules:2
Biological Source:Kluyveromyces lactis NRRL Y-1140
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:E3 ubiquitin-protein ligase BRE1
Gene (Uniprot):BRE1
Chain IDs:C, D, E, F
Chain Length:206
Number of Molecules:4
Biological Source:Kluyveromyces lactis NRRL Y-1140
Ligand Molecules
Primary Citation
Structural basis for the Rad6 activation by the Bre1 N-terminal domain.
Elife 12 ? ? (2023)
PMID: 36912886 DOI: 10.7554/eLife.84157

Abstact

The mono-ubiquitination of the histone protein H2B (H2Bub1) is a highly conserved histone post-translational modification that plays critical roles in many fundamental processes. In yeast, this modification is catalyzed by the conserved Bre1-Rad6 complex. Bre1 contains a unique N-terminal Rad6-binding domain (RBD), how it interacts with Rad6 and contributes to the H2Bub1 catalysis is unclear. Here, we present crystal structure of the Bre1 RBD-Rad6 complex and structure-guided functional studies. Our structure provides a detailed picture of the interaction between the dimeric Bre1 RBD and a single Rad6 molecule. We further found that the interaction stimulates Rad6's enzymatic activity by allosterically increasing its active site accessibility and likely contribute to the H2Bub1 catalysis through additional mechanisms. In line with these important functions, we found that the interaction is crucial for multiple H2Bub1-regulated processes. Our study provides molecular insights into the H2Bub1 catalysis.

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Primary Citation of related structures