7W36 image
Deposition Date 2021-11-25
Release Date 2022-09-21
Last Version Date 2024-10-16
Entry Detail
PDB ID:
7W36
Keywords:
Title:
Crystal structure of human Atg5 complexed with a stapled peptide
Biological Source:
Source Organism:
Homo sapiens (Taxon ID: 9606)
Host Organism:
Method Details:
Experimental Method:
Resolution:
3.00 Å
R-Value Free:
0.28
R-Value Work:
0.24
R-Value Observed:
0.24
Space Group:
P 21 21 21
Macromolecular Entities
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:Autophagy protein 5
Gene (Uniprot):ATG5
Chain IDs:A
Chain Length:275
Number of Molecules:1
Biological Source:Homo sapiens
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:Stapled ATG16L1-derived peptide
Gene (Uniprot):ATG16L1
Chain IDs:B
Chain Length:23
Number of Molecules:1
Biological Source:Homo sapiens
Modified Residue
Compound ID Chain ID Parent Comp ID Details 2D Image
MK8 B LEU modified residue
Ligand Molecules
Primary Citation
Targeting the ATG5-ATG16L1 Protein-Protein Interaction with a Hydrocarbon-Stapled Peptide Derived from ATG16L1 for Autophagy Inhibition.
J.Am.Chem.Soc. 144 17671 17679 (2022)
PMID: 36107218 DOI: 10.1021/jacs.2c07648

Abstact

Selective modulation of autophagy is a promising therapeutic strategy, especially for cancer treatment. However, the lack of specific autophagy inhibitors limits this strategy. The formation of the ATG12-ATG5-ATG16L1 complex is essential for targeting the ATG12-ATG5 conjugate to proper membranes and to generate LC3-II for the progression of autophagy. Thus, targeting ATG5-ATG16L1 protein-protein interactions (PPIs) might inhibit early stage autophagy with high specificity. In this paper, we report that a stapled peptide derived from ATG16L1 exhibits potent binding affinity to ATG5, striking resistance to proteolysis, and significant autophagy inhibition activities in cells.

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Chemical

Disease

Primary Citation of related structures
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