7W2I image
Deposition Date 2021-11-23
Release Date 2022-07-06
Last Version Date 2023-11-29
Entry Detail
PDB ID:
7W2I
Keywords:
Title:
Crystal structure of LOG (Rv1205) from Mycobacterium tuberculosis
Biological Source:
Source Organism:
Method Details:
Experimental Method:
Resolution:
1.80 Å
R-Value Free:
0.21
R-Value Work:
0.16
R-Value Observed:
0.16
Space Group:
P 21 21 21
Macromolecular Entities
Polymer Type:polypeptide(L)
Molecule:Cytokinin riboside 5'-monophosphate phosphoribohydrolase
Chain IDs:A
Chain Length:183
Number of Molecules:1
Biological Source:Mycobacterium tuberculosis
Polymer Type:polypeptide(L)
Molecule:Cytokinin riboside 5'-monophosphate phosphoribohydrolase
Chain IDs:B, C, D
Chain Length:177
Number of Molecules:3
Biological Source:Mycobacterium tuberculosis
Primary Citation
Crystal structure of the cytokinin-producing enzyme "lonely guy" (LOG) from Mycobacterium tuberculosis.
Biochem.Biophys.Res.Commun. 598 113 118 (2022)
PMID: 35158209 DOI: 10.1016/j.bbrc.2022.01.103

Abstact

Mycobacterium tuberculosis (Mtb) is an extremely successful intracellular pathogen that cause a large number of death worldwide. It is interesting that this non-phytopathogen can synthesize cytokinin by "lonely guy" (LOG) protein. The cytokinin biosynthesis pathway in Mtb is not clear. Here we determined the crystal structure of LOG from Mtb (MtLOG) at a high resolution of 1.8 Å. MtLOG exists as dimer which belongs to type-I LOG and shows a typical α-β Rossmann fold. Like other LOGs, MtLOG also contains a conserved "PGGXGTXXE" motif that contributes to the formation of an active site. For the first time, we found that the MtLOG binds to Mg2+ in the negative potential pocket. According to the docking result, we found that Arg78, Arg98 and Tyr162 should be the key amino acid involved in substrate binding. Our findings provide a structural basis for cytokinin study in Mtb and will play an important role in design and development of enzyme inhibitors.

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