7VZG image
Deposition Date 2021-11-16
Release Date 2023-02-22
Last Version Date 2023-02-22
Entry Detail
PDB ID:
7VZG
Keywords:
Title:
Structure of the Acidobacteria homodimeric reaction center bound with cytochrome c (the larger form)
Biological Source:
Source Organism:
Method Details:
Experimental Method:
Resolution:
2.61 Å
Aggregation State:
PARTICLE
Reconstruction Method:
SINGLE PARTICLE
Macromolecular Entities
Polymer Type:polypeptide(L)
Molecule:PscA
Gene (Uniprot):Cabther_A2188
Chain IDs:A, G (auth: a)
Chain Length:858
Number of Molecules:2
Biological Source:Chloracidobacterium thermophilum
Polymer Type:polypeptide(L)
Molecule:Photosystem P840 reaction center iron-sulfur protein
Gene (Uniprot):YS_M60-F11.051
Chain IDs:M (auth: B)
Chain Length:76
Number of Molecules:1
Biological Source:Chloracidobacterium thermophilum
Polymer Type:polypeptide(L)
Molecule:Cytochrome c, mono-and diheme variants
Gene (Uniprot):Cabther_A2184
Chain IDs:B (auth: C)
Chain Length:204
Number of Molecules:1
Biological Source:Chloracidobacterium thermophilum
Polymer Type:polypeptide(L)
Molecule:PscD'
Gene (Uniprot):Cabther_A1475
Chain IDs:N (auth: D)
Chain Length:70
Number of Molecules:1
Biological Source:Chloracidobacterium thermophilum
Polymer Type:polypeptide(L)
Molecule:PscE
Gene (Uniprot):Cabther_B0587
Chain IDs:C (auth: E), I (auth: e)
Chain Length:35
Number of Molecules:2
Biological Source:Chloracidobacterium thermophilum
Polymer Type:polypeptide(L)
Molecule:PscF
Gene (Uniprot):Cabther_A1265
Chain IDs:D (auth: F), J (auth: f)
Chain Length:35
Number of Molecules:2
Biological Source:Chloracidobacterium thermophilum
Polymer Type:polypeptide(L)
Molecule:PscG
Gene (Uniprot):Cabther_A2043
Chain IDs:E (auth: G), K (auth: g)
Chain Length:38
Number of Molecules:2
Biological Source:Chloracidobacterium thermophilum
Polymer Type:polypeptide(L)
Molecule:undefined polypeptide
Chain IDs:F (auth: H), L (auth: h)
Chain Length:19
Number of Molecules:2
Biological Source:Chloracidobacterium thermophilum
Polymer Type:polypeptide(L)
Molecule:Cytochrome c domain-containing protein
Gene (Uniprot):Cabther_A2183
Chain IDs:H (auth: c)
Chain Length:204
Number of Molecules:1
Biological Source:Chloracidobacterium thermophilum
Primary Citation
Structure of the Acidobacteria homodimeric reaction center bound with cytochrome c.
Nat Commun 13 7745 7745 (2022)
PMID: 36517472 DOI: 10.1038/s41467-022-35460-6

Abstact

Photosynthesis converts light energy to chemical energy to fuel life on earth. Light energy is harvested by antenna pigments and transferred to reaction centers (RCs) to drive the electron transfer (ET) reactions. Here, we present cryo-electron microscopy (cryo-EM) structures of two forms of the RC from the microaerophilic Chloracidobacterium thermophilum (CabRC): one containing 10 subunits, including two different cytochromes; and the other possessing two additional subunits, PscB and PscZ. The larger form contained 2 Zn-bacteriochlorophylls, 16 bacteriochlorophylls, 10 chlorophylls, 2 lycopenes, 2 hemes, 3 Fe4S4 clusters, 12 lipids, 2 Ca2+ ions and 6 water molecules, revealing a type I RC with an ET chain involving two hemes and a hybrid antenna containing bacteriochlorophylls and chlorophylls. Our results provide a structural basis for understanding the excitation energy and ET within the CabRC and offer evolutionary insights into the origin and adaptation of photosynthetic RCs.

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