7VX2 image
Entry Detail
PDB ID:
7VX2
Keywords:
Title:
Crystal Structure of the Y53F/N55A/I80F/L114V/I116V mutant of LEH
Biological Source:
Source Organism:
PDB Version:
Deposition Date:
2021-11-12
Release Date:
2023-01-18
Method Details:
Experimental Method:
Resolution:
2.49 Å
R-Value Free:
0.27
R-Value Work:
0.23
R-Value Observed:
0.23
Space Group:
P 21 21 21
Macromolecular Entities
Polymer Type:polypeptide(L)
Description:Limonene-1,2-epoxide hydrolase
Mutations:Y53F, N55A, I80F, L114V, I116V
Chain IDs:A, B, C, D
Chain Length:155
Number of Molecules:4
Biological Source:Rhodococcus erythropolis
Primary Citation
Rational enzyme design for enabling biocatalytic Baldwin cyclization and asymmetric synthesis of chiral heterocycles.
Nat Commun 13 7813 7813 (2022)
PMID: 36535947 DOI: 10.1038/s41467-022-35468-y

Abstact

Chiral heterocyclic compounds are needed for important medicinal applications. We report an in silico strategy for the biocatalytic synthesis of chiral N- and O-heterocycles via Baldwin cyclization modes of hydroxy- and amino-substituted epoxides and oxetanes using the limonene epoxide hydrolase from Rhodococcus erythropolis. This enzyme normally catalyzes hydrolysis with formation of vicinal diols. Firstly, the required shutdown of the undesired natural water-mediated ring-opening is achieved by rational mutagenesis of the active site. In silico enzyme design is then continued with generation of the improved mutants. These variants prove to be versatile catalysts for preparing chiral N- and O-heterocycles with up to 99% conversion, and enantiomeric ratios up to 99:1. Crystal structural data and computational modeling reveal that Baldwin-type cyclizations, catalyzed by the reprogrammed enzyme, are enabled by reshaping the active-site environment that directs the distal RHN and HO-substituents to be intramolecular nucleophiles.

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