7VU7 image
Deposition Date 2021-11-01
Release Date 2022-04-06
Last Version Date 2024-11-13
Entry Detail
PDB ID:
7VU7
Title:
The Solution structure of the C-terminal domain from flagelliform spidroin
Biological Source:
Source Organism:
Host Organism:
Method Details:
Experimental Method:
Conformers Calculated:
200
Conformers Submitted:
20
Selection Criteria:
structures with the lowest energy
Macromolecular Entities
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:Flagelliform fibroin
Chain IDs:A, B
Chain Length:108
Number of Molecules:2
Biological Source:Araneus ventricosus
Ligand Molecules
Primary Citation
C-Terminal Domains of Spider Silk Proteins Having Divergent Structures but Conserved Functional Roles.
Biomacromolecules 23 1643 1651 (2022)
PMID: 35312302 DOI: 10.1021/acs.biomac.1c01513

Abstact

Spider silk is self-assembled from silk proteins or spidroins. C-terminal domains (CTDs) of various types of spidroins are relatively conserved in amino acid sequences and are suggested to adopt similar structures and perform similar functional roles in spidroin storage and silk formation. Here, we solved the structure of the CTD from a capture-spiral silk protein (CTDFl) and characterized its stability and fibril formation in the presence and absence of a reducing agent at different pH values. CTDFl adopts a dimeric structure with 8 helices, but the CTDs of other types of spidroins exist in a domain-swapped dimeric structure with 10 helices. Despite the structural differences, CTDFl is pH-responsive in stability and fibril formation, similar to the CTDs from minor and major ampullate spidroins. Thus, the functional role of CTDs in silk fiber formation seems conserved. Comparing wild-type CTDFl and its mutants, we found that the pH-responsive behavior results from the protonation of H76, which is conserved from different spider species. In addition, the fibril formation rate of CTDFl correlates with its instability, suggesting that structural changes are involved in fibril formation.

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Primary Citation of related structures