7VT2 image
Deposition Date 2021-10-27
Release Date 2022-11-16
Last Version Date 2023-11-29
Entry Detail
PDB ID:
7VT2
Keywords:
METAL BINDING PROTEIN
Title:
Azumapecten Farreri ferritin
Biological Source:
Source Organism:
Azumapecten farreri (Taxon ID: 106299)
Host Organism:
Escherichia coli
Method Details:
Experimental Method:
X-RAY DIFFRACTION
Resolution:
2.40 Å
R-Value Free:
0.23
R-Value Work:
0.19
R-Value Observed:
0.19
Space Group:
P 1 2 1
7VT2 validation report
Macromolecular Entities
Protein Blast
Polymer Type:polypeptide(L)
Molecule:Ferritin
Chain IDs:A, B (auth: S), C (auth: I), D (auth: O), E (auth: V), F (auth: C), G (auth: Q), H (auth: U), I (auth: a), J (auth: c), K (auth: d), L (auth: e), M (auth: f), N (auth: g), O (auth: i), P (auth: j), Q (auth: k), R (auth: l), S (auth: m), T (auth: o), U (auth: q), V (auth: w), W (auth: s), X (auth: v), Y (auth: B), Z (auth: D), AA (auth: E), BA (auth: F), CA (auth: H), DA (auth: J), EA (auth: K), FA (auth: L), GA (auth: M), HA (auth: N), IA (auth: P), JA (auth: R), KA (auth: T), LA (auth: W), MA (auth: X), NA (auth: Z), OA (auth: b), PA (auth: h), QA (auth: n), RA (auth: p), SA (auth: r), TA (auth: t), UA (auth: u), VA (auth: x)
Chain Length:171
Number of Molecules:48
Biological Source:Azumapecten farreri
UniProt ID:A0A173CSP7 Pfam ID:PF00210
Ligand Molecules
FE
Primary Citation
Structural comparison between the DNA-protective ability of scallop and shrimp ferritin from iron-induced oxidative damage.
Food Chem 386 132827 132827 (2022)
PMID: 35364499 DOI: 10.1016/j.foodchem.2022.132827

Abstact

The structure and function of ferritin from seafood has been largely unexplored. In this study, homopolymeric scallop ferritin (ApF) was prepared for the first time, the apo form of which exhibited the stronger ability to protect DNA from iron-induced oxidative damage as compared to its analogue, homopolymeric shrimp ferritin (MjF). Their difference in DNA-protective activity was derived from less hydroxyl radicals produced during iron oxidation in the presence of scallop ferritin than shrimp ferritin. The kinetic results showed that apo-ApF catalyzed the faster ferrous ions oxidation by oxygen into nontoxic ferric ions as compared to apo-MjF. Newly reported crystal structure of ApF revealed that its stronger ferroxidase activity stemmed from different structures in the triple axis channel and ferroxidase site as compared to MjF. All these new findings advance our understanding of the relationship between the structure and function of food-related protein.

Legend

Protein

Chemical

Disease

Primary Citation of related structures
7VT2