7VP9 image
Deposition Date 2021-10-15
Release Date 2022-06-08
Last Version Date 2023-11-29
Entry Detail
PDB ID:
7VP9
Keywords:
Title:
Crystal structure of human ClpP in complex with ZG111
Biological Source:
Source Organism:
Homo sapiens (Taxon ID: 9606)
Host Organism:
Method Details:
Experimental Method:
Resolution:
2.55 Å
R-Value Free:
0.23
R-Value Work:
0.20
R-Value Observed:
0.20
Space Group:
P 1 21 1
Macromolecular Entities
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:ATP-dependent Clp protease proteolytic subunit, mitochondrial
Gene (Uniprot):CLPP
Chain IDs:A, B, C, D, E, F, G, H, I, J, K, L, M, N
Chain Length:221
Number of Molecules:14
Biological Source:Homo sapiens
Primary Citation
Aberrant human ClpP activation disturbs mitochondrial proteome homeostasis to suppress pancreatic ductal adenocarcinoma.
Cell Chem Biol 29 1396 1408.e8 (2022)
PMID: 35905743 DOI: 10.1016/j.chembiol.2022.07.002

Abstact

The mitochondrial caseinolytic protease P (ClpP) is a target candidate for treating leukemia; however, the effects of ClpP modulation on solid tumors have not been adequately explored. Here, we report a potent activator of ClpP with the therapeutic potential for pancreatic ductal adenocarcinoma (PDAC). We first validated that aberrant ClpP activation leads to growth arrest of PDAC cells and tumors. We then performed high-throughput screening and synthetic optimization, from which we identified ZG111, a potent activator of ClpP. ZG111 binds to ClpP and promotes the ClpP-mediated degradation of respiratory chain complexes. This degradation activates the JNK/c-Jun pathway, induces the endoplasmic reticulum stress response, and consequently causes the growth arrest of PDAC cells. ZG111 also produces inhibitory effects on tumor growth in cell line-derived and patient-derived xenograft mouse models. Altogether, our data demonstrate a promising therapeutic strategy for PDAC suppression through the chemical activation of ClpP.

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Primary Citation of related structures