7VOX image
Deposition Date 2021-10-15
Release Date 2022-08-17
Last Version Date 2023-11-29
Entry Detail
PDB ID:
7VOX
Title:
The crystal structure of human forkhead box protein A in complex with DNA 2
Biological Source:
Source Organism:
Homo sapiens (Taxon ID: 9606)
Host Organism:
Method Details:
Experimental Method:
Resolution:
2.10 Å
R-Value Free:
0.21
R-Value Work:
0.18
R-Value Observed:
0.18
Space Group:
C 2 2 2
Macromolecular Entities
Polymer Type:polypeptide(L)
Molecule:Hepatocyte nuclear factor 3-alpha
Gene (Uniprot):FOXA1
Chain IDs:E (auth: A), F (auth: B), G (auth: C), H
Chain Length:102
Number of Molecules:4
Biological Source:Homo sapiens
Polymer Type:polydeoxyribonucleotide
Molecule:DNA (5'-D(P*TP*CP*GP*AP*TP*AP*AP*TP*AP*AP*AP*TP*AP*TP*TP*T)-3')
Chain IDs:A (auth: D), C (auth: F)
Chain Length:16
Number of Molecules:2
Biological Source:Homo sapiens
Polymer Type:polydeoxyribonucleotide
Molecule:DNA (5'-D(P*AP*AP*AP*TP*AP*TP*TP*TP*AP*TP*TP*AP*TP*CP*GP*A)-3')
Chain IDs:B (auth: E), D (auth: G)
Chain Length:16
Number of Molecules:2
Biological Source:Homo sapiens
Ligand Molecules
Primary Citation
FOXL2 and FOXA1 cooperatively assemble on the TP53 promoter in alternative dimer configurations.
Nucleic Acids Res. 50 8929 8946 (2022)
PMID: 35920317 DOI: 10.1093/nar/gkac673

Abstact

Although both the p53 and forkhead box (FOX) family proteins are key transcription factors associated with cancer progression, their direct relationship is unknown. Here, we found that FOX family proteins bind to the non-canonical homotypic cluster of the p53 promoter region (TP53). Analysis of crystal structures of FOX proteins (FOXL2 and FOXA1) bound to the p53 homotypic cluster indicated that they interact with a 2:1 stoichiometry accommodated by FOX-induced DNA allostery. In particular, FOX proteins exhibited distinct dimerization patterns in recognition of the same p53-DNA; dimer formation of FOXA1 involved protein-protein interaction, but FOXL2 did not. Biochemical and biological functional analyses confirmed the cooperative binding of FOX proteins to the TP53 promoter for the transcriptional activation of TP53. In addition, up-regulation of TP53 was necessary for FOX proteins to exhibit anti-proliferative activity in cancer cells. These analyses reveal the presence of a discrete characteristic within FOX family proteins in which FOX proteins regulate the transcription activity of the p53 tumor suppressor via cooperative binding to the TP53 promoter in alternative dimer configurations.

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Primary Citation of related structures