7VLN image
Deposition Date 2021-10-05
Release Date 2022-07-06
Last Version Date 2023-11-29
Entry Detail
PDB ID:
7VLN
Keywords:
Title:
NSD2-PWWP1 domain bound with an imidazol-5-yl benzonitrile compound
Biological Source:
Source Organism:
Homo sapiens (Taxon ID: 9606)
Method Details:
Experimental Method:
Resolution:
3.09 Å
R-Value Free:
0.34
R-Value Work:
0.29
R-Value Observed:
0.29
Space Group:
P 31 2 1
Macromolecular Entities
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:Histone-lysine N-methyltransferase NSD2
Gene (Uniprot):NSD2
Chain IDs:A, B, C
Chain Length:132
Number of Molecules:3
Biological Source:Homo sapiens
Ligand Molecules
Primary Citation
Structure-Based Discovery of a Series of NSD2-PWWP1 Inhibitors.
J.Med.Chem. 65 9459 9477 (2022)
PMID: 35704853 DOI: 10.1021/acs.jmedchem.2c00709

Abstact

Overexpression, point mutations, or translocations of protein lysine methyltransferase NSD2 occur in many types of cancer cells. Therefore, it was recognized as onco-protein and considered as a promising anticancer drug target. NSD2 consists of multiple domains including a SET catalytic domain and two PWWP domains binding to methylated histone proteins. Here, we reported our efforts to develop a series of NSD2-PWWP1 inhibitors, and further structure-based optimization resulted in a potent inhibitor 38, which has high selectivity toward the NSD2-PWWP1 domain. The detailed biological evaluation revealed that compound 38 can bind to NSD2-PWWP1 and then affect the expression of genes regulated by NSD2. The current discovery will provide a useful chemical probe to the future research in understanding the specific regulation mode of NSD2 by PWWP1 recognition and pave the way to develop potential drugs targeting NSD2 protein.

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Protein

Chemical

Disease

Primary Citation of related structures