7VLK image
Deposition Date 2021-10-04
Release Date 2021-12-01
Last Version Date 2025-07-02
Entry Detail
PDB ID:
7VLK
Keywords:
Title:
eIF2B-SFSV NSs C2-imposed
Biological Source:
Source Organism:
Host Organism:
Method Details:
Experimental Method:
Resolution:
2.27 Å
Aggregation State:
PARTICLE
Reconstruction Method:
SINGLE PARTICLE
Macromolecular Entities
Polymer Type:polypeptide(L)
Molecule:Translation initiation factor eIF-2B subunit alpha
Gene (Uniprot):EIF2B1
Chain IDs:A, B
Chain Length:307
Number of Molecules:2
Biological Source:Homo sapiens
Polymer Type:polypeptide(L)
Molecule:Translation initiation factor eIF-2B subunit beta
Gene (Uniprot):EIF2B2
Chain IDs:C, D
Chain Length:351
Number of Molecules:2
Biological Source:Homo sapiens
Polymer Type:polypeptide(L)
Molecule:Translation initiation factor eIF-2B subunit gamma
Gene (Uniprot):EIF2B3
Chain IDs:E, F
Chain Length:452
Number of Molecules:2
Biological Source:Homo sapiens
Polymer Type:polypeptide(L)
Molecule:Translation initiation factor eIF-2B subunit delta
Gene (Uniprot):EIF2B4
Chain IDs:G, H
Chain Length:523
Number of Molecules:2
Biological Source:Homo sapiens
Polymer Type:polypeptide(L)
Molecule:Translation initiation factor eIF-2B subunit epsilon
Gene (Uniprot):EIF2B5
Chain IDs:I, J
Chain Length:721
Number of Molecules:2
Biological Source:Homo sapiens
Polymer Type:polypeptide(L)
Molecule:Non-structural protein NS-S
Gene (Uniprot):NSS
Chain IDs:K, L
Chain Length:261
Number of Molecules:2
Biological Source:Sandfly fever sicilian virus
Ligand Molecules
Primary Citation
eIF2B-capturing viral protein NSs suppresses the integrated stress response.
Nat Commun 12 7102 7102 (2021)
PMID: 34876589 DOI: 10.1038/s41467-021-27337-x

Abstact

Various stressors such as viral infection lead to the suppression of cap-dependent translation and the activation of the integrated stress response (ISR), since the stress-induced phosphorylated eukaryotic translation initiation factor 2 [eIF2(αP)] tightly binds to eIF2B to prevent it from exchanging guanine nucleotide molecules on its substrate, unphosphorylated eIF2. Sandfly fever Sicilian virus (SFSV) evades this cap-dependent translation suppression through the interaction between its nonstructural protein NSs and host eIF2B. However, its precise mechanism has remained unclear. Here, our cryo-electron microscopy (cryo-EM) analysis reveals that SFSV NSs binds to the α-subunit of eIF2B in a competitive manner with eIF2(αP). Together with SFSV NSs, eIF2B retains nucleotide exchange activity even in the presence of eIF2(αP), in line with the cryo-EM structures of the eIF2B•SFSV NSs•unphosphorylated eIF2 complex. A genome-wide ribosome profiling analysis clarified that SFSV NSs expressed in cultured human cells attenuates the ISR triggered by thapsigargin, an endoplasmic reticulum stress inducer. Furthermore, SFSV NSs introduced in rat hippocampal neurons and human induced-pluripotent stem (iPS) cell-derived motor neurons exhibits neuroprotective effects against the ISR-inducing stress. Since ISR inhibition is beneficial in various neurological disease models, SFSV NSs may be a promising therapeutic ISR inhibitor.

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Primary Citation of related structures