7VGQ image
Deposition Date 2021-09-18
Release Date 2021-09-29
Last Version Date 2024-10-30
Entry Detail
PDB ID:
7VGQ
Keywords:
Title:
Cryo-EM structure of Machupo virus polymerase L in complex with matrix protein Z
Biological Source:
Source Organism:
Host Organism:
Method Details:
Experimental Method:
Resolution:
4.00 Å
Aggregation State:
PARTICLE
Reconstruction Method:
SINGLE PARTICLE
Macromolecular Entities
Polymer Type:polypeptide(L)
Molecule:RNA-directed RNA polymerase L
Gene (Uniprot):L
Chain IDs:A
Chain Length:2238
Number of Molecules:1
Biological Source:Machupo virus
Polymer Type:polypeptide(L)
Molecule:Maltose/maltodextrin-binding periplasmic protein,RING finger protein Z
Gene (Uniprot):malE, Z
Chain IDs:B
Chain Length:496
Number of Molecules:1
Biological Source:Escherichia coli (strain K12), Machupo virus
Ligand Molecules
Primary Citation
Structure of Machupo virus polymerase in complex with matrix protein Z.
Nat Commun 12 6163 6163 (2021)
PMID: 34697302 DOI: 10.1038/s41467-021-26432-3

Abstact

The Arenaviridae family includes several viruses that cause severe human hemorrhagic fevers with high mortality, with no effective countermeasures currently available. The arenavirus multi-domain L protein is involved in viral transcription and replication and represents a promising target for antiviral drugs. The arenavirus matrix protein Z is a small multi-functional protein that inhibits the activities of the L protein. Here we report the structure of Machupo virus L protein in complex with Z determined by cryo-electron microscopy. The Z protein acts as a staple and binds the L protein with 1:1 stoichiometry at the intersection between the PA-C-like region, RNA-dependent RNA polymerase and PB2-N-like region. Binding of the Z protein may lock the multiple domains of L into a fixed arrangement leading to loss of catalytic activity. These results further our understanding of the inhibitory mechanism of arenavirus replication machinery and provide a novel perspective to develop antiviral drugs.

Legend

Protein

Chemical

Disease

Primary Citation of related structures