7VES image
Deposition Date 2021-09-10
Release Date 2021-11-03
Last Version Date 2023-11-29
Entry Detail
PDB ID:
7VES
Keywords:
Title:
Crystal Structure of nucleotide-free Irgb6
Biological Source:
Source Organism:
Mus musculus (Taxon ID: 10090)
Host Organism:
Method Details:
Experimental Method:
Resolution:
2.00 Å
R-Value Free:
0.24
R-Value Work:
0.20
R-Value Observed:
0.20
Space Group:
P 21 21 21
Macromolecular Entities
Polymer Type:polypeptide(L)
Molecule:T-cell-specific guanine nucleotide triphosphate-binding protein 2
Gene (Uniprot):Tgtp2
Chain IDs:A
Chain Length:417
Number of Molecules:1
Biological Source:Mus musculus
Primary Citation
Structural basis of membrane recognition of Toxoplasma gondii vacuole by Irgb6.
Life Sci Alliance 5 ? ? (2022)
PMID: 34753804 DOI: 10.26508/lsa.202101149

Abstact

The p47 immunity-related GTPase (IRG) Irgb6 plays a pioneering role in host defense against Toxoplasma gondii infection. Irgb6 is recruited to the parasitophorous vacuole membrane (PVM) formed by T. gondii and disrupts it. Despite the importance of this process, the molecular mechanisms accounting for PVM recognition by Irgb6 remain elusive because of lack of structural information on Irgb6. Here we report the crystal structures of mouse Irgb6 in the GTP-bound and nucleotide-free forms. Irgb6 exhibits a similar overall architecture to other IRGs in which GTP binding induces conformational changes in both the dimerization interface and the membrane-binding interface. The membrane-binding interface of Irgb6 assumes a unique conformation, composed of N- and C-terminal helical regions forming a phospholipid binding site. In silico docking of phospholipids further revealed membrane-binding residues that were validated through mutagenesis and cell-based assays. Collectively, these data demonstrate a novel structural basis for Irgb6 to recognize T. gondii PVM in a manner distinct from other IRGs.

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Primary Citation of related structures