7VDY image
Deposition Date 2021-09-07
Release Date 2021-12-15
Last Version Date 2023-11-29
Entry Detail
PDB ID:
7VDY
Keywords:
Title:
Crystal structure of O-ureidoserine racemase
Biological Source:
Source Organism:
Method Details:
Experimental Method:
Resolution:
2.12 Å
R-Value Free:
0.20
R-Value Work:
0.16
R-Value Observed:
0.16
Space Group:
P 1 21 1
Macromolecular Entities
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:O-ureido-serine racemase
Gene (Uniprot):dcsC
Chain IDs:A, B
Chain Length:295
Number of Molecules:2
Biological Source:Streptomyces lavendulae
Ligand Molecules
Primary Citation
Crystal structure of O-ureidoserine racemase found in the d-cycloserine biosynthetic pathway.
Proteins 90 912 918 (2022)
PMID: 34877716 DOI: 10.1002/prot.26290

Abstact

The O-ureidoserine racemase (DcsC) is an enzyme found from the biosynthetic gene cluster of antitubercular agent d-cycloserine. Although DcsC is homologous to diaminopimelate epimerase (DapF) that catalyzes the interconversion between ll- and dl-diaminopimelic acid, it specifically catalyzes the interconversion between O-ureido-l-serine and its enantiomer. Here we determined the crystal structure of DcsC at a resolution of 2.12 Å, implicating that the catalytic mechanism of DcsC shares similarity with that of DapF. Comparing the structure of the active center of DcsC to that of DapF, Thr72, Thr198, and Tyr219 of DcsC are likely to be involved in the substrate specificity.

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Disease

Primary Citation of related structures