7VDS image
Entry Detail
PDB ID:
7VDS
Keywords:
Title:
The structure of cyclin-dependent kinase 5 (CDK5) in complex with p25 and Compound 24
Biological Source:
Source Organism:
Host Organism:
PDB Version:
Deposition Date:
2021-09-07
Release Date:
2022-03-09
Method Details:
Experimental Method:
Resolution:
3.05 Å
R-Value Free:
0.27
R-Value Work:
0.22
R-Value Observed:
0.22
Space Group:
P 32 2 1
Macromolecular Entities
Polymer Type:polypeptide(L)
Description:Cyclin-dependent-like kinase 5, p25
Chain IDs:A, B
Chain Length:292
Number of Molecules:2
Biological Source:Homo sapiens
Polymer Type:polypeptide(L)
Description:Cyclin-dependent kinase 5 activator 1
Chain IDs:C, D
Chain Length:209
Number of Molecules:2
Biological Source:Homo sapiens
Primary Citation
Discovery and Optimization of Highly Selective Inhibitors of CDK5.
J.Med.Chem. 65 3575 3596 (2022)
PMID: 35143203 DOI: 10.1021/acs.jmedchem.1c02069

Abstact

Autosomal dominant polycystic kidney disease (ADPKD) is the most prevalent monogenic human disease, but to date, only one therapy (tolvaptan) is approved to treat kidney cysts in ADPKD patients. Cyclin-dependent kinase 5 (CDK5), an atypical member of the cyclin-dependent kinase family, has been implicated as a target for treating ADPKD. However, no compounds have been disclosed to date that selectively inhibit CDK5 while sparing the broader CDK family members. Herein, we report the discovery of CDK5 inhibitors, including GFB-12811, that are highly selective over the other tested kinases. In cellular assays, our compounds demonstrate CDK5 target engagement while avoiding anti-proliferative effects associated with inhibiting other CDKs. In addition, we show that the compounds in this series exhibit promising in vivo PK profiles, enabling their use as tool compounds for interrogating the role of CDK5 in ADPKD and other diseases.

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Primary Citation of related structures