7VDR image
Deposition Date 2021-09-07
Release Date 2022-03-09
Last Version Date 2023-11-29
Entry Detail
PDB ID:
7VDR
Keywords:
Title:
The structure of cyclin-dependent kinase 5 (CDK5) in complex with p25 and Compound 13
Biological Source:
Source Organism:
Homo sapiens (Taxon ID: 9606)
Host Organism:
Method Details:
Experimental Method:
Resolution:
2.55 Å
R-Value Free:
0.25
R-Value Work:
0.21
R-Value Observed:
0.22
Space Group:
P 32 2 1
Macromolecular Entities
Polymer Type:polypeptide(L)
Molecule:Cyclin-dependent-like kinase 5
Gene (Uniprot):CDK5
Chain IDs:A, B
Chain Length:292
Number of Molecules:2
Biological Source:Homo sapiens
Polymer Type:polypeptide(L)
Molecule:Cyclin-dependent kinase 5 activator 1, p25
Gene (Uniprot):CDK5R1
Chain IDs:C, D
Chain Length:209
Number of Molecules:2
Biological Source:Homo sapiens
Primary Citation
Discovery and Optimization of Highly Selective Inhibitors of CDK5.
J.Med.Chem. 65 3575 3596 (2022)
PMID: 35143203 DOI: 10.1021/acs.jmedchem.1c02069

Abstact

Autosomal dominant polycystic kidney disease (ADPKD) is the most prevalent monogenic human disease, but to date, only one therapy (tolvaptan) is approved to treat kidney cysts in ADPKD patients. Cyclin-dependent kinase 5 (CDK5), an atypical member of the cyclin-dependent kinase family, has been implicated as a target for treating ADPKD. However, no compounds have been disclosed to date that selectively inhibit CDK5 while sparing the broader CDK family members. Herein, we report the discovery of CDK5 inhibitors, including GFB-12811, that are highly selective over the other tested kinases. In cellular assays, our compounds demonstrate CDK5 target engagement while avoiding anti-proliferative effects associated with inhibiting other CDKs. In addition, we show that the compounds in this series exhibit promising in vivo PK profiles, enabling their use as tool compounds for interrogating the role of CDK5 in ADPKD and other diseases.

Legend

Protein

Chemical

Disease

Primary Citation of related structures