7VD5 image
Deposition Date 2021-09-06
Release Date 2022-03-02
Last Version Date 2024-11-20
Entry Detail
PDB ID:
7VD5
Keywords:
ELECTRON TRANSPORT
Title:
Structure of C2S2M2-type PSII-FCPII supercomplex from diatom
Biological Source:
Source Organism:
Chaetoceros gracilis (Taxon ID: 184592)
Method Details:
Experimental Method:
ELECTRON MICROSCOPY
Resolution:
2.50 Å
Aggregation State:
PARTICLE
Reconstruction Method:
SINGLE PARTICLE
7VD5 validation report
Macromolecular Entities
Polymer Type:polypeptide(L)
Molecule:Unknown protein 0
Chain IDs:V (auth: 0), SA (auth: 5)
Chain Length:31
Number of Molecules:2
Biological Source:Chaetoceros gracilis
Polymer Type:polypeptide(L)
Molecule:Unknown protein 1
Chain IDs:W (auth: 1), TA (auth: 6)
Chain Length:30
Number of Molecules:2
Biological Source:Chaetoceros gracilis
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:Chlorophyll a/b-binding protein
Gene (Uniprot):lhcf1
Chain IDs:UA (auth: 11), FB (auth: 31)
Chain Length:176
Number of Molecules:2
Biological Source:Chaetoceros gracilis
UniProt ID:A0A679BXP6 Pfam ID:PF00504
Polymer Type:polypeptide(L)
Molecule:Fcpb2, Fucoxanthin chlorophyll a/c-binding protein
Chain IDs:VA (auth: 12), GB (auth: 32)
Chain Length:169
Number of Molecules:2
Biological Source:Chaetoceros gracilis
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:Chlorophyll a/b-binding protein
Gene (Uniprot):lhcf1
Chain IDs:WA (auth: 13), HB (auth: 33)
Chain Length:169
Number of Molecules:2
Biological Source:Chaetoceros gracilis
UniProt ID:A0A679BXP6 Pfam ID:PF00504
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:Chlorophyll a/b-binding protein
Gene (Uniprot):lhcf1
Chain IDs:XA (auth: 14), IB (auth: 34)
Chain Length:172
Number of Molecules:2
Biological Source:Chaetoceros gracilis
UniProt ID:A0A679BXP6 Pfam ID:PF00504
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:Chlorophyll a/b-binding protein
Gene (Uniprot):lhcf1
Chain IDs:YA (auth: 15), JB (auth: 35)
Chain Length:170
Number of Molecules:2
Biological Source:Chaetoceros gracilis
UniProt ID:A0A679BXP6 Pfam ID:PF00504
Polymer Type:polypeptide(L)
Molecule:Fcpb3, Fucoxanthin chlorophyll a/c-binding protein
Chain IDs:ZA (auth: 16), KB (auth: 36)
Chain Length:179
Number of Molecules:2
Biological Source:Chaetoceros gracilis
Polymer Type:polypeptide(L)
Molecule:Fcpb4, Fucoxanthin chlorophyll a/c-binding protein
Chain IDs:AB (auth: 17), LB (auth: 37)
Chain Length:176
Number of Molecules:2
Biological Source:Chaetoceros gracilis
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:Chlorophyll a/b-binding protein
Gene (Uniprot):lhcf1
Chain IDs:BB (auth: 18), MB (auth: 38)
Chain Length:168
Number of Molecules:2
Biological Source:Chaetoceros gracilis
UniProt ID:A0A679BXP6 Pfam ID:PF00504
Polymer Type:polypeptide(L)
Molecule:Fcpb5, Fucoxanthin chlorophyll a/c-binding protein
Chain IDs:CB (auth: 19), NB (auth: 39)
Chain Length:227
Number of Molecules:2
Biological Source:Chaetoceros gracilis
Polymer Type:polypeptide(L)
Molecule:Fcpb6, Fucoxanthin chlorophyll a/c-binding protein
Chain IDs:DB (auth: 20), OB (auth: 40)
Chain Length:155
Number of Molecules:2
Biological Source:Chaetoceros gracilis
Polymer Type:polypeptide(L)
Molecule:Fcpb7, Fucoxanthin chlorophyll a/c-binding protein
Chain IDs:EB (auth: 21), PB (auth: 41)
Chain Length:162
Number of Molecules:2
Biological Source:Chaetoceros gracilis
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:Photosystem II protein D1
Gene (Uniprot):psbA
Chain IDs:A, X (auth: a)
Chain Length:334
Number of Molecules:2
Biological Source:Chaetoceros gracilis
UniProt ID:A0A679C261 Pfam ID:PF00124
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:Photosystem II CP47 reaction center protein
Gene (Uniprot):psbB
Chain IDs:B, Y (auth: b)
Chain Length:484
Number of Molecules:2
Biological Source:Chaetoceros gracilis
UniProt ID:A0A679C6E3 Pfam ID:PF00421
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:Photosystem II CP43 reaction center protein
Gene (Uniprot):psbC
Chain IDs:C, Z (auth: c)
Chain Length:451
Number of Molecules:2
Biological Source:Chaetoceros gracilis
UniProt ID:A0A679BVV7 Pfam ID:PF00421
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:Photosystem II D2 protein
Gene (Uniprot):psbD
Chain IDs:D, AA (auth: d)
Chain Length:341
Number of Molecules:2
Biological Source:Chaetoceros gracilis
UniProt ID:A0A679C012 Pfam ID:PF00124
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:Cytochrome b559 subunit alpha
Gene (Uniprot):psbE
Chain IDs:E, BA (auth: e)
Chain Length:75
Number of Molecules:2
Biological Source:Chaetoceros gracilis
UniProt ID:A0A679C209 Pfam ID:PF00283, PF00284
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:Cytochrome b559 subunit beta
Gene (Uniprot):psbF
Chain IDs:F, CA (auth: f)
Chain Length:28
Number of Molecules:2
Biological Source:Chaetoceros gracilis
UniProt ID:A0A679BVT0 Pfam ID:PF00283
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:Photosystem II reaction center protein H
Gene (Uniprot):psbH
Chain IDs:G (auth: H), DA (auth: h)
Chain Length:66
Number of Molecules:2
Biological Source:Chaetoceros gracilis
UniProt ID:B7XBY7 Pfam ID:PF00737
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:Photosystem II reaction center protein I
Gene (Uniprot):psbI
Chain IDs:H (auth: I), EA (auth: i)
Chain Length:35
Number of Molecules:2
Biological Source:Chaetoceros gracilis
UniProt ID:A0A679BVT8 Pfam ID:PF02532
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:Photosystem II reaction center protein J
Gene (Uniprot):psbJ
Chain IDs:I (auth: J), FA (auth: j)
Chain Length:34
Number of Molecules:2
Biological Source:Chaetoceros gracilis
UniProt ID:A0A679C298 Pfam ID:PF01788
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:Photosystem II reaction center protein K
Gene (Uniprot):psbK
Chain IDs:J (auth: K), GA (auth: k)
Chain Length:37
Number of Molecules:2
Biological Source:Chaetoceros gracilis
UniProt ID:A0A679BWI3 Pfam ID:PF02533
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:Photosystem II reaction center protein L
Gene (Uniprot):psbL
Chain IDs:K (auth: L), HA (auth: l)
Chain Length:38
Number of Molecules:2
Biological Source:Chaetoceros gracilis
UniProt ID:A0A679C262 Pfam ID:PF02419
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:Photosystem II subunit
Gene (Uniprot):psbM
Chain IDs:L (auth: M), IA (auth: m)
Chain Length:42
Number of Molecules:2
Biological Source:Chaetoceros gracilis
UniProt ID:A0A679C2A0
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:Extrinsic protein in photosystem II
Gene (Uniprot):psbO
Chain IDs:M (auth: O), JA (auth: o)
Chain Length:245
Number of Molecules:2
Biological Source:Chaetoceros gracilis
UniProt ID:B6ZHE8 Pfam ID:PF01716
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:Extrinsic protein in photosystem II
Gene (Uniprot):psbQ'
Chain IDs:T (auth: Q), QA (auth: q)
Chain Length:151
Number of Molecules:2
Biological Source:Chaetoceros gracilis
UniProt ID:B6ZHE9
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:Photosystem II reaction center protein T
Gene (Uniprot):psbT
Chain IDs:N (auth: T), KA (auth: t)
Chain Length:30
Number of Molecules:2
Biological Source:Chaetoceros gracilis
UniProt ID:A0A679C6E6 Pfam ID:PF01405
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:Extrinsic protein in photosystem II
Gene (Uniprot):psbU
Chain IDs:O (auth: U), LA (auth: u)
Chain Length:93
Number of Molecules:2
Biological Source:Chaetoceros gracilis
UniProt ID:B6ZHF0 Pfam ID:PF06514
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:Cytochrome c-550
Gene (Uniprot):psbV
Chain IDs:P (auth: V), MA (auth: v)
Chain Length:136
Number of Molecules:2
Biological Source:Chaetoceros gracilis
UniProt ID:B6ZHF4 Pfam ID:PF14495
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:Photosystem II reaction center protein W
Gene (Uniprot):psbW
Chain IDs:U (auth: W), RA (auth: w)
Chain Length:52
Number of Molecules:2
Biological Source:Chaetoceros gracilis
UniProt ID:A0A679C6E8
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:Photosystem II reaction center X protein
Gene (Uniprot):psbX
Chain IDs:R (auth: X), OA (auth: x)
Chain Length:37
Number of Molecules:2
Biological Source:Chaetoceros gracilis
UniProt ID:B6ZHF2 Pfam ID:PF06596
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:Photosystem II reaction center protein Ycf12
Gene (Uniprot):ycf12
Chain IDs:Q (auth: Y), NA (auth: y)
Chain Length:34
Number of Molecules:2
Biological Source:Chaetoceros gracilis
UniProt ID:A0A679BVT2 Pfam ID:PF05969
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:Photosystem II reaction center protein Z
Gene (Uniprot):psbZ
Chain IDs:S (auth: Z), PA (auth: z)
Chain Length:59
Number of Molecules:2
Biological Source:Chaetoceros gracilis
UniProt ID:A0A679C215 Pfam ID:PF01737
Ligand Molecules
A86
BCR
BCT
CLA
DD6
DGD
FE2
HEM
KC1
LHG
LMG
LMU
OEX
PHO
PL9
SQD
UNL
Primary Citation
Structural basis for different types of hetero-tetrameric light-harvesting complexes in a diatom PSII-FCPII supercomplex
Nat Commun 13 1764 ? (2022)
DOI: 10.1038/s41467-022-29294-5
Primary Citation of related structures
7VD5
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