ISDA: 7VBU

Deposition Date 2021-09-01

Release Date 2022-02-16

Last Version Date 2023-11-29

Entry Detail

PDB ID:

7VBU

Keywords:

TRANSFERASE/INHIBITOR

Title:

Crystal structure of human pyruvate dehydrogenase kinase 2 in complex with compound 5

Biological Source:

Source Organism:

Homo sapiens (Taxon ID: 9606)

Host Organism:

Escherichia coli BL21(DE3)

Method Details:

Experimental Method:

X-RAY DIFFRACTION

Resolution:

1.89 Å

R-Value Free:

0.19

R-Value Work:

0.18

R-Value Observed:

0.18

Space Group:

P 64

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Macromolecular Entities

Structures with similar UniProt ID

Protein Blast

Polymer Type:polypeptide(L)
Molecule:[Pyruvate dehydrogenase (acetyl-transferring)] kinase isozyme 2, mitochondrial
Gene (Uniprot):PDK2
Chain IDs:A
Chain Length:394
Number of Molecules:1
Biological Source:Homo sapiens

UniProt ID:Q15119 Pfam ID:PF10436, PF02518 EC:2.7.11.2

Ligand Molecules

6I4

ACT

DMS

Primary Citation

Structure-based drug design of novel and highly potent pyruvate dehydrogenase kinase inhibitors.

Bessho, Y, Akaki, T, Hara, Y, Yamakawa, M, Obika, S, Mori, G, Ubukata, M, Yasue, K, Nakane, Y, Terasako, Y, Orita, T, Doi, S, Iwanaga, T, Fujishima, A, Adachi, T, Ueno, H, Motomura, T.Show

Bioorg.Med.Chem. 52 116514 ? (2021)

DOI: 10.1016/j.bmc.2021.116514

Primary Citation of related structures