7V6H image
Entry Detail
PDB ID:
7V6H
Keywords:
Title:
Crystal Structure of the SpnL
Biological Source:
Source Organism:
PDB Version:
Deposition Date:
2021-08-20
Release Date:
2021-12-29
Method Details:
Experimental Method:
Resolution:
3.05 Å
R-Value Free:
0.25
R-Value Work:
0.20
R-Value Observed:
0.20
Space Group:
H 3 2
Macromolecular Entities
Polymer Type:polypeptide(L)
Description:Cyclopropane fatty-acyl-phospholipid synthase-like methyltransferase
Chain IDs:A, B
Chain Length:284
Number of Molecules:2
Biological Source:Saccharopolyspora spinosa
Ligand Molecules
Primary Citation
Evidence for an Enzyme-Catalyzed Rauhut-Currier Reaction during the Biosynthesis of Spinosyn A.
J.Am.Chem.Soc. 143 20291 20295 (2021)
PMID: 34813308 DOI: 10.1021/jacs.1c09482

Abstact

The catalog of enzymes known to catalyze the nucleophile-assisted formation of C-C bonds is extremely small, and there is presently no definitive example of a biological Rauhut-Currier reaction. Biosynthesis of the polyketide insecticide spinosyn A in Saccharopolyspora spinosa involves a [4 + 2]-cycloaddition and a subsequent intramolecular C-C bond formation catalyzed by SpnF and SpnL, respectively. Isotope tracer experiments and kinetic isotope effects, however, imply that the SpnL-catalyzed reaction proceeds without initial deprotonation of the substrate. The crystal structure of SpnL exhibits high similarity to SAM-dependent methyltransferases as well as SpnF. The residue Cys60 is also shown to reside in the SpnL active site, and the Cys60Ala SpnL mutant is found to be devoid of activity. Moreover, SpnL is covalently modified at Cys60 and irreversibly inactivated when it is coincubated with a fluorinated substrate analogue designed as a suicide inactivator of nucleophile-assisted C-C bond formation. These results suggest that SpnL catalyzes a biological Rauhut-Currier reaction.

Legend

Protein

Chemical

Disease

Primary Citation of related structures