7UZ6 image
Entry Detail
PDB ID:
7UZ6
EMDB ID:
Title:
Structure of the SARS-CoV-2 S 6P trimer in complex with the mouse antibody Fab fragment, M8a-28
Biological Source:
PDB Version:
Deposition Date:
2022-05-08
Release Date:
2022-12-07
Method Details:
Experimental Method:
Resolution:
2.80 Å
Aggregation State:
PARTICLE
Reconstruction Method:
SINGLE PARTICLE
Macromolecular Entities
Polymer Type:polypeptide(L)
Description:Spike glycoprotein
Mutations:P817F,P892A,P899A,P942A,P986K,P987V
Chain IDs:A, B, C
Chain Length:1256
Number of Molecules:3
Biological Source:Severe acute respiratory syndrome coronavirus 2
Polymer Type:polypeptide(L)
Description:M8a-28 Fab heavy chain
Chain IDs:D (auth: H), F (auth: M), H (auth: P)
Chain Length:232
Number of Molecules:3
Biological Source:Mus musculus
Polymer Type:polypeptide(L)
Description:M8a-28 Fab light chain
Chain IDs:E (auth: L), G (auth: N), I (auth: Q)
Chain Length:214
Number of Molecules:3
Biological Source:Mus musculus
Ligand Molecules
Primary Citation
Neutralizing monoclonal antibodies elicited by mosaic RBD nanoparticles bind conserved sarbecovirus epitopes.
Immunity 55 2419 ? (2022)
PMID: 36370711 DOI: 10.1016/j.immuni.2022.10.019

Abstact

Increased immune evasion by SARS-CoV-2 variants of concern highlights the need for new therapeutic neutralizing antibodies. Immunization with nanoparticles co-displaying spike receptor-binding domains (RBDs) from eight sarbecoviruses (mosaic-8 RBD-nanoparticles) efficiently elicits cross-reactive polyclonal antibodies against conserved sarbecovirus RBD epitopes. Here, we identified monoclonal antibodies (mAbs) capable of cross-reactive binding and neutralization of animal sarbecoviruses and SARS-CoV-2 variants by screening single mouse B cells secreting IgGs that bind two or more sarbecovirus RBDs. Single-particle cryo-EM structures of antibody-spike complexes, including a Fab-Omicron complex, mapped neutralizing mAbs to conserved class 1/4 RBD epitopes. Structural analyses revealed neutralization mechanisms, potentials for intra-spike trimer cross-linking by IgGs, and induced changes in trimer upon Fab binding. In addition, we identified a mAb-resembling Bebtelovimab, an EUA-approved human class 3 anti-RBD mAb. These results support using mosaic RBD-nanoparticle vaccination to generate and identify therapeutic pan-sarbecovirus and pan-variant mAbs.

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