7UZ1 image
Deposition Date 2022-05-08
Release Date 2023-04-05
Last Version Date 2024-10-30
Entry Detail
PDB ID:
7UZ1
Keywords:
Title:
Structure of beta-glycosidase from Sulfolobus solfataricus in complex with C5a-bromo-valienide.
Biological Source:
Source Organism:
Method Details:
Experimental Method:
Resolution:
1.58 Å
R-Value Free:
0.21
R-Value Work:
0.18
Space Group:
P 31 2 1
Macromolecular Entities
Polymer Type:polypeptide(L)
Molecule:Beta-galactosidase
Mutations:A235H
Chain IDs:A, B
Chain Length:489
Number of Molecules:2
Biological Source:Saccharolobus solfataricus
Primary Citation
Vinyl Halide-Modified Unsaturated Cyclitols are Mechanism-Based Glycosidase Inhibitors.
Angew.Chem.Int.Ed.Engl. 62 e202301258 e202301258 (2023)
PMID: 36940280 DOI: 10.1002/anie.202301258

Abstact

Suitably configured allyl ethers of unsaturated cyclitols act as substrates of β-glycosidases, reacting via allylic cation transition states. Incorporation of halogens at the vinylic position of these carbasugars, along with an activated leaving group, generates potent inactivators of β-glycosidases. Enzymatic turnover of these halogenated cyclitols (F, Cl, Br) displayed a counter-intuitive trend wherein the most electronegative substituents yielded the most labile pseudo-glycosidic linkages. Structures of complexes with the Sulfolobus β-glucosidase revealed similar enzyme-ligand interactions to those seen in complexes with a 2-fluorosugar inhibitor, the lone exception being displacement of tyrosine 322 from the active site by the halogen. Mutation of Y322 to Y322F largely abolished glycosidase activity, consistent with lost interactions at O5, but minimally affected (7-fold) rates of carbasugar hydrolysis, yielding a more selective enzyme for unsaturated cyclitol ether hydrolysis.

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