7UUM image
Deposition Date 2022-04-28
Release Date 2022-11-02
Last Version Date 2024-02-14
Entry Detail
PDB ID:
7UUM
Keywords:
Title:
Crystal structure of aminoglycoside resistance enzyme ApmA, complex with paromomycin and coenzyme A
Biological Source:
Source Organism:
Method Details:
Experimental Method:
Resolution:
2.74 Å
R-Value Free:
0.24
R-Value Work:
0.22
R-Value Observed:
0.22
Space Group:
P 43 3 2
Macromolecular Entities
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:Aminocyclitol acetyltransferase ApmA
Gene (Uniprot):apmA
Chain IDs:A
Chain Length:276
Number of Molecules:1
Biological Source:Staphylococcus aureus
Primary Citation
Mechanistic plasticity in ApmA enables aminoglycoside promiscuity for resistance.
Nat.Chem.Biol. 20 234 242 (2024)
PMID: 37973888 DOI: 10.1038/s41589-023-01483-3

Abstact

The efficacy of aminoglycoside antibiotics is waning due to the acquisition of diverse resistance mechanisms by bacteria. Among the most prevalent are aminoglycoside acetyltransferases (AACs) that inactivate the antibiotics through acetyl coenzyme A-mediated modification. Most AACs are members of the GCN5 superfamily of acyltransferases which lack conserved active site residues that participate in catalysis. ApmA is the first reported AAC belonging to the left-handed β-helix superfamily. These enzymes are characterized by an essential active site histidine that acts as an active site base. Here we show that ApmA confers broad-spectrum aminoglycoside resistance with a molecular mechanism that diverges from other detoxifying left-handed β-helix superfamily enzymes and canonical GCN5 AACs. We find that the active site histidine plays different functions depending on the acetyl-accepting aminoglycoside substrate. This flexibility in the mechanism of a single enzyme underscores the plasticity of antibiotic resistance elements to co-opt protein catalysts in the evolution of drug detoxification.

Legend

Protein

Chemical

Disease

Primary Citation of related structures