7UTG image
Deposition Date 2022-04-26
Release Date 2022-12-21
Last Version Date 2024-10-23
Entry Detail
PDB ID:
7UTG
Title:
2D9 nanobody to BCL11A-exZF23 fragment
Biological Source:
Source Organism(s):
Vicugna pacos (Taxon ID: 30538)
Expression System(s):
Method Details:
Experimental Method:
Resolution:
1.25 Å
R-Value Free:
0.21
R-Value Work:
0.19
R-Value Observed:
0.19
Space Group:
P 21 21 21
Macromolecular Entities
Polymer Type:polypeptide(L)
Molecule:2D9-V102G nanobody
Chain IDs:A
Chain Length:130
Number of Molecules:1
Biological Source:Vicugna pacos
Ligand Molecules
Primary Citation
A Cell-Permeant Nanobody-Based Degrader That Induces Fetal Hemoglobin.
Acs Cent.Sci. 8 1695 1703 (2022)
PMID: 36589886 DOI: 10.1021/acscentsci.2c00998

Abstact

Proximity-based strategies to degrade proteins have enormous therapeutic potential in medicine, but the technologies are limited to proteins for which small molecule ligands exist. The identification of such ligands for therapeutically relevant but "undruggable" proteins remains challenging. Herein, we employed yeast surface display of synthetic nanobodies to identify a protein ligand selective for BCL11A, a critical repressor of fetal globin gene transcription. Fusion of the nanobody to a cell-permeant miniature protein and an E3 adaptor creates a degrader that depletes cellular BCL11A in differentiated primary erythroid precursor cells, thereby inducing the expression of fetal hemoglobin, a modifier of clinical severity of sickle cell disease and β-thalassemia. Our strategy provides a means of fetal hemoglobin induction through reversible, temporal modulation of BCL11A. Additionally, it establishes a new paradigm for the targeted degradation of previously intractable proteins.

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Primary Citation of related structures
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