7UQ9 image
Entry Detail
PDB ID:
7UQ9
Keywords:
Title:
S48T Horse Liver Alcohol Dehydrogenase in Complex with NADH and N-Cyclohexylformamide
Biological Source:
Source Organism:
Host Organism:
PDB Version:
Deposition Date:
2022-04-19
Release Date:
2023-02-01
Method Details:
Experimental Method:
Resolution:
1.40 Å
R-Value Free:
0.18
R-Value Work:
0.15
R-Value Observed:
0.15
Space Group:
P 1
Macromolecular Entities
Polymer Type:polypeptide(L)
Description:Alcohol dehydrogenase E chain
Mutations:S48T
Chain IDs:A, B
Chain Length:377
Number of Molecules:2
Biological Source:Equus caballus
Primary Citation
Enhanced active-site electric field accelerates enzyme catalysis.
Nat.Chem. 15 1715 1721 (2023)
PMID: 37563323 DOI: 10.1038/s41557-023-01287-x

Abstact

The design and improvement of enzymes based on physical principles remain challenging. Here we demonstrate that the principle of electrostatic catalysis can be leveraged to substantially improve a natural enzyme's activity. We enhanced the active-site electric field in horse liver alcohol dehydrogenase by replacing the serine hydrogen-bond donor with threonine and replacing the catalytic Zn2+ with Co2+. Based on the electric field enhancement, we make a quantitative prediction of rate acceleration-50-fold faster than the wild-type enzyme-which was in close agreement with experimental measurements. The effects of the hydrogen bonding and metal coordination, two distinct chemical forces, are described by a unified physical quantity-electric field, which is quantitative, and shown here to be additive and predictive. These results suggest a new design paradigm for both biological and non-biological catalysts.

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