7UPB image
Entry Detail
PDB ID:
7UPB
EMDB ID:
Title:
Prefusion-stabilized Nipah virus fusion protein complexed with Fab 1H1
Biological Source:
Host Organism:
PDB Version:
Deposition Date:
2022-04-14
Release Date:
2023-03-29
Method Details:
Experimental Method:
Resolution:
3.00 Å
Aggregation State:
PARTICLE
Reconstruction Method:
SINGLE PARTICLE
Macromolecular Entities
Polymer Type:polypeptide(L)
Description:Fusion glycoprotein F0
Chain IDs:A, D, G
Chain Length:475
Number of Molecules:3
Biological Source:Nipah henipavirus
Polymer Type:polypeptide(L)
Description:Fab 1H1 heavy chain
Chain IDs:B, C, H
Chain Length:120
Number of Molecules:3
Biological Source:Mus musculus
Polymer Type:polypeptide(L)
Description:Fab 1H1 light chain
Chain IDs:E, F, I (auth: L)
Chain Length:106
Number of Molecules:3
Biological Source:Mus musculus
Ligand Molecules
Primary Citation
Structural basis for antibody recognition of vulnerable epitopes on Nipah virus F protein.
Nat Commun 14 1494 1494 (2023)
PMID: 36932063 DOI: 10.1038/s41467-023-36995-y

Abstact

Nipah virus (NiV) is a pathogenic paramyxovirus that causes fatal encephalitis in humans. Two envelope glycoproteins, the attachment protein (G/RBP) and fusion protein (F), facilitate entry into host cells. Due to its vital role, NiV F presents an attractive target for developing vaccines and therapeutics. Several neutralization-sensitive epitopes on the NiV F apex have been described, however the antigenicity of most of the F protein's surface remains uncharacterized. Here, we immunize mice with prefusion-stabilized NiV F and isolate ten monoclonal antibodies that neutralize pseudotyped virus. Cryo-electron microscopy reveals eight neutralization-sensitive epitopes on NiV F, four of which have not previously been described. Novel sites span the lateral and basal faces of NiV F, expanding the known library of vulnerable epitopes. Seven of ten antibodies bind the Hendra virus (HeV) F protein. Multiple sequence alignment suggests that some of these newly identified neutralizing antibodies may also bind F proteins across the Henipavirus genus. This work identifies new epitopes as targets for therapeutics, provides a molecular basis for NiV neutralization, and lays a foundation for development of new cross-reactive antibodies targeting Henipavirus F proteins.

Legend

Protein

Chemical

Disease

Primary Citation of related structures