7UMB image
Deposition Date 2022-04-06
Release Date 2023-09-27
Last Version Date 2024-03-20
Entry Detail
PDB ID:
7UMB
Keywords:
Title:
NanoBRET tracer Tram-bo bound to a KSR2-MEK1 complex
Biological Source:
Source Organism:
Homo sapiens (Taxon ID: 9606)
Host Organism:
Method Details:
Experimental Method:
Resolution:
3.23 Å
R-Value Free:
0.26
R-Value Work:
0.22
R-Value Observed:
0.23
Space Group:
P 61 2 2
Macromolecular Entities
Polymer Type:polypeptide(L)
Molecule:Kinase suppressor of Ras 2
Gene (Uniprot):KSR2
Chain IDs:A (auth: B)
Chain Length:342
Number of Molecules:1
Biological Source:Homo sapiens
Polymer Type:polypeptide(L)
Molecule:Dual specificity mitogen-activated protein kinase kinase 1
Gene (Uniprot):MAP2K1
Chain IDs:B (auth: C)
Chain Length:384
Number of Molecules:1
Biological Source:Homo sapiens
Primary Citation
Live-cell target engagement of allosteric MEKi on MEK-RAF/KSR-14-3-3 complexes.
Nat.Chem.Biol. 20 373 381 (2024)
PMID: 37919548 DOI: 10.1038/s41589-023-01454-8

Abstact

The RAS-mitogen-activated protein kinase (MAPK) pathway includes KSR, RAF, MEK and the phospho-regulatory sensor 14-3-3. Specific assemblies among these components drive various diseases and likely dictate efficacy for numerous targeted therapies, including allosteric MEK inhibitors (MEKi). However, directly measuring drug interactions on physiological RAS-MAPK complexes in live cells has been inherently challenging to query and therefore remains poorly understood. Here we present a series of NanoBRET-based assays to quantify direct target engagement of MEKi on MEK1 and higher-order MEK1-bound complexes with ARAF, BRAF, CRAF, KSR1 and KSR2 in the presence and absence of 14-3-3 in living cells. We find distinct MEKi preferences among these complexes that can be compiled to generate inhibitor binding profiles. Further, these assays can report on the influence of the pathogenic BRAF-V600E mutant on MEKi binding. Taken together, these approaches can be used as a platform to screen for compounds intended to target specific complexes in the RAS-MAPK cascade.

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Primary Citation of related structures