7ULD image
Entry Detail
PDB ID:
7ULD
Keywords:
Title:
GTP complex of F420-gamma glutamyl ligase (CofE) from Archaeoglobus fulgidus
Biological Source:
Host Organism:
PDB Version:
Deposition Date:
2022-04-04
Release Date:
2023-04-12
Method Details:
Experimental Method:
Resolution:
1.30 Å
R-Value Free:
0.18
R-Value Work:
0.15
R-Value Observed:
0.15
Space Group:
P 41 2 2
Macromolecular Entities
Polymer Type:polypeptide(L)
Description:Coenzyme F420:L-glutamate ligase
Chain IDs:A
Chain Length:251
Number of Molecules:1
Biological Source:Archaeoglobus fulgidus DSM 4304
Primary Citation

Abstact

Poly-γ-glutamate tails are a distinctive feature of archaeal, bacterial, and eukaryotic cofactors, including the folates and F420. Despite decades of research, key mechanistic questions remain as to how enzymes successively add glutamates to poly-γ-glutamate chains while maintaining cofactor specificity. Here, we show how poly-γ-glutamylation of folate and F420 by folylpolyglutamate synthases and γ-glutamyl ligases, non-homologous enzymes, occurs via processive addition of L-glutamate onto growing γ-glutamyl chain termini. We further reveal structural snapshots of the archaeal γ-glutamyl ligase (CofE) in action, crucially including a bulged-chain product that shows how the cofactor is retained while successive glutamates are added to the chain terminus. This bulging substrate model of processive poly-γ-glutamylation by terminal extension is arguably ubiquitous in such biopolymerisation reactions, including addition to folates, and demonstrates convergent evolution in diverse species from archaea to humans.

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