7UGM image
Deposition Date 2022-03-25
Release Date 2022-11-09
Last Version Date 2024-11-06
Entry Detail
PDB ID:
7UGM
Keywords:
Title:
Crystal Structure of BG24-iGL CDR3mat Fab
Biological Source:
Source Organism:
Homo sapiens (Taxon ID: 9606)
Host Organism:
Method Details:
Experimental Method:
Resolution:
1.40 Å
R-Value Free:
0.20
R-Value Work:
0.19
Space Group:
P 21 21 21
Macromolecular Entities
Polymer Type:polypeptide(L)
Molecule:BG24-iGL CDR3mat Fab heavy chain
Chain IDs:A (auth: H)
Chain Length:225
Number of Molecules:1
Biological Source:Homo sapiens
Polymer Type:polypeptide(L)
Molecule:BG24-iGL CDR3mat Fab light chain
Chain IDs:B (auth: L)
Chain Length:209
Number of Molecules:1
Biological Source:Homo sapiens
Primary Citation
HIV-1 CD4-binding site germline antibody-Env structures inform vaccine design.
Nat Commun 13 6123 6123 (2022)
PMID: 36253376 DOI: 10.1038/s41467-022-33860-2

Abstact

BG24, a VRC01-class broadly neutralizing antibody (bNAb) against HIV-1 Env with relatively few somatic hypermutations (SHMs), represents a promising target for vaccine strategies to elicit CD4-binding site (CD4bs) bNAbs. To understand how SHMs correlate with BG24 neutralization of HIV-1, we report 4.1 Å and 3.4 Å single-particle cryo-EM structures of two inferred germline (iGL) BG24 precursors complexed with engineered Env-based immunogens lacking CD4bs N-glycans. Structures reveal critical Env contacts by BG24iGL and identify antibody light chain structural features that impede Env recognition. In addition, biochemical data and cryo-EM structures of BG24iGL variants bound to Envs with CD4bs glycans present provide insights into N-glycan accommodation, including structural modes of light chain adaptations in the presence of the N276gp120 glycan. Together, these findings reveal Env regions critical for germline antibody recognition and potential sites to alter in immunogen design.

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