7U6Q image
Entry Detail
PDB ID:
7U6Q
Keywords:
Title:
TEM-1 beta-lactamase
Biological Source:
Source Organism:
Host Organism:
PDB Version:
Deposition Date:
2022-03-04
Release Date:
2022-09-07
Method Details:
Experimental Method:
Resolution:
1.90 Å
R-Value Free:
0.23
R-Value Work:
0.19
R-Value Observed:
0.19
Space Group:
P 21 21 21
Macromolecular Entities
Polymer Type:polypeptide(L)
Description:Beta-lactamase
Mutations:M182T
Chain IDs:A, B, C
Chain Length:264
Number of Molecules:3
Biological Source:Escherichia coli
Ligand Molecules
Primary Citation
Protein Electric Fields Enable Faster and Longer-Lasting Covalent Inhibition of beta-Lactamases.
J.Am.Chem.Soc. 144 20947 20954 (2022)
PMID: 36324090 DOI: 10.1021/jacs.2c09876

Abstact

The widespread design of covalent drugs has focused on crafting reactive groups of proper electrophilicity and positioning toward targeted amino-acid nucleophiles. We found that environmental electric fields projected onto a reactive chemical bond, an overlooked design element, play essential roles in the covalent inhibition of TEM-1 β-lactamase by avibactam. Using the vibrational Stark effect, the magnitudes of the electric fields that are exerted by TEM active sites onto avibactam's reactive C═O were measured and demonstrate an electrostatic gating effect that promotes bond formation yet relatively suppresses the reverse dissociation. These results suggest new principles of covalent drug design and off-target site prediction. Unlike shape and electrostatic complementary which address binding constants, electrostatic catalysis drives reaction rates, essential for covalent inhibition, and deepens our understanding of chemical reactivity, selectivity, and stability in complex systems.

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Primary Citation of related structures