7U6H image
Deposition Date 2022-03-04
Release Date 2023-03-15
Last Version Date 2023-10-25
Entry Detail
PDB ID:
7U6H
Title:
HalD with ornithine and alpha-ketoglutarate
Biological Source:
Source Organism:
Method Details:
Experimental Method:
Resolution:
2.00 Å
R-Value Free:
0.21
R-Value Work:
0.17
R-Value Observed:
0.17
Space Group:
P 1
Macromolecular Entities
Polymer Type:polypeptide(L)
Molecule:Halogenase D
Gene (Uniprot):VP02_10785
Chain IDs:A, B, C, D
Chain Length:264
Number of Molecules:4
Biological Source:Pseudomonas kilonensis
Primary Citation
Biocatalytic control of site-selectivity and chain length-selectivity in radical amino acid halogenases.
Proc.Natl.Acad.Sci.USA 120 e2214512120 e2214512120 (2023)
PMID: 36913566 DOI: 10.1073/pnas.2214512120

Abstact

Biocatalytic C-H activation has the potential to merge enzymatic and synthetic strategies for bond formation. FeII/αKG-dependent halogenases are particularly distinguished for their ability both to control selective C-H activation as well as to direct group transfer of a bound anion along a reaction axis separate from oxygen rebound, enabling the development of new transformations. In this context, we elucidate the basis for the selectivity of enzymes that perform selective halogenation to yield 4-Cl-lysine (BesD), 5-Cl-lysine (HalB), and 4-Cl-ornithine (HalD), allowing us to probe how site-selectivity and chain length selectivity are achieved. We now report the crystal structure of the HalB and HalD, revealing the key role of the substrate-binding lid in positioning the substrate for C4 vs C5 chlorination and recognition of lysine vs ornithine. Targeted engineering of the substrate-binding lid further demonstrates that these selectivities can be altered or switched, showcasing the potential to develop halogenases for biocatalytic applications.

Legend

Protein

Chemical

Disease

Primary Citation of related structures