7U5H image
Deposition Date 2022-03-02
Release Date 2022-12-14
Last Version Date 2025-06-04
Entry Detail
PDB ID:
7U5H
Title:
Cryo-EM Structure of DNPEP
Biological Source:
Source Organism:
Bos taurus (Taxon ID: 9913)
Method Details:
Experimental Method:
Resolution:
3.32 Å
Aggregation State:
PARTICLE
Reconstruction Method:
SINGLE PARTICLE
Macromolecular Entities
Polymer Type:polypeptide(L)
Molecule:Aspartyl aminopeptidase
Gene (Uniprot):DNPEP
Chain IDs:A, B, C, D, E, F, G, H, I, J, K, L
Chain Length:471
Number of Molecules:12
Biological Source:Bos taurus
Ligand Molecules
Primary Citation
Toward structural-omics of the bovine retinal pigment epithelium.
Cell Rep 41 111876 111876 (2022)
PMID: 36577381 DOI: 10.1016/j.celrep.2022.111876

Abstact

The use of an integrated systems biology approach to investigate tissues and organs has been thought to be impracticable in the field of structural biology, where the techniques mainly focus on determining the structure of a particular biomacromolecule of interest. Here, we report the use of cryoelectron microscopy (cryo-EM) to define the composition of a raw bovine retinal pigment epithelium (RPE) lysate. From this sample, we simultaneously identify and solve cryo-EM structures of seven different RPE enzymes whose functions affect neurotransmitter recycling, iron metabolism, gluconeogenesis, glycolysis, axonal development, and energy homeostasis. Interestingly, dysfunction of these important proteins has been directly linked to several neurodegenerative disorders, including Huntington's disease, amyotrophic lateral sclerosis (ALS), Parkinson's disease, Alzheimer's disease, and schizophrenia. Our work underscores the importance of cryo-EM in facilitating tissue and organ proteomics at the atomic level.

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Primary Citation of related structures