7U4W image
Deposition Date 2022-03-01
Release Date 2023-03-08
Last Version Date 2023-12-20
Entry Detail
PDB ID:
7U4W
Title:
The ubiquitin-associated domain of human thirty-eight negative kinase-1 flexibly fused to the 1TEL crystallization chaperone via a 2-glycine linker and crystallized at traditional protein concentration
Biological Source:
Source Organism:
Homo sapiens (Taxon ID: 9606)
Method Details:
Experimental Method:
Resolution:
2.10 Å
R-Value Free:
0.27
R-Value Work:
0.24
R-Value Observed:
0.24
Space Group:
P 65
Macromolecular Entities
Protein Blast
Polymer Type:polypeptide(L)
Molecule:Transcription factor ETV6,Non-receptor tyrosine-protein kinase TNK1
Gene (Uniprot):ETV6, TNK1
Mutagens:R80S,V112E,C610A,C644A
Chain IDs:A
Chain Length:155
Number of Molecules:1
Biological Source:Homo sapiens
Primary Citation
Fusion crystallization reveals the behavior of both the 1TEL crystallization chaperone and the TNK1 UBA domain.
Structure 31 1589 ? (2023)
PMID: 37776857 DOI: 10.1016/j.str.2023.09.001

Abstact

Human thirty-eight-negative kinase-1 (TNK1) is implicated in cancer progression. The TNK1 ubiquitin-associated (UBA) domain binds polyubiquitin and plays a regulatory role in TNK1 activity and stability. No experimentally determined molecular structure of this unusual UBA domain is available. We fused the UBA domain to the 1TEL variant of the translocation ETS leukemia protein sterile alpha motif (TELSAM) crystallization chaperone and obtained crystals diffracting as far as 1.53 Å. GG and GSGG linkers allowed the UBA to reproducibly find a productive binding mode against its host 1TEL polymer and crystallize at protein concentrations as low as 0.2 mg/mL. Our studies support a mechanism of 1TEL fusion crystallization and show that 1TEL fusion crystals require fewer crystal contacts than traditional protein crystals. Modeling and experimental validation suggest the UBA domain may be selective for both the length and linkages of polyubiquitin chains.

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