7U4L image
Deposition Date 2022-02-28
Release Date 2022-12-07
Last Version Date 2024-10-23
Entry Detail
PDB ID:
7U4L
Keywords:
Title:
Crystal structure of human GPX4-U46C in complex with MAC-5576
Biological Source:
Source Organism:
Homo sapiens (Taxon ID: 9606)
Host Organism:
Method Details:
Experimental Method:
Resolution:
2.25 Å
R-Value Free:
0.22
R-Value Work:
0.16
R-Value Observed:
0.17
Space Group:
P 1 21 1
Macromolecular Entities
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:Phospholipid hydroperoxide glutathione peroxidase
Gene (Uniprot):GPX4
Chain IDs:A, B, C, D
Chain Length:192
Number of Molecules:4
Biological Source:Homo sapiens
Ligand Molecules
Primary Citation
Small-molecule allosteric inhibitors of GPX4.
Cell Chem Biol 29 1680 1693.e9 (2022)
PMID: 36423641 DOI: 10.1016/j.chembiol.2022.11.003

Abstact

Encouraged by the dependence of drug-resistant, metastatic cancers on GPX4, we examined biophysical mechanisms of GPX4 inhibition, which revealed an unexpected allosteric site. We found that this site was involved in native regeneration of GPX4 under low glutathione conditions. Covalent binding of inhibitors to this allosteric site caused a conformational change, inhibition of activity, and subsequent cellular GPX4 protein degradation. To verify this site in an unbiased manner, we screened a library of compounds and identified and validated that an additional compound can covalently bind in this allosteric site, inhibiting and degrading GPX4. We determined co-crystal structures of six different inhibitors bound in this site. We have thus identified an allosteric mechanism for small molecules targeting aggressive cancers dependent on GPX4.

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Primary Citation of related structures